Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g01635 ATGTCAGAAACACTACGATTTGGTGATGATGTTACAAGAGATAACAAAAAGGTAAAGCGCAAGATGGATGATGTTATTGCTGTTGATTCAGAGACGTCATTGTCTCTGAGTTTAGGAGGAGGGAGAAGTGGAGAATCTTCATCCAAATCCCTCAAGATCCATGAGGAGTTAAGGGAATACCCATGTAAGTTTTGCAACAAGAAATTTTCAAGTTCTCAAGCCCTGGGAGGACACCAAGGTGCCCATAGACGTGAAAGAGTGCTTGCGAGAATTGAAAAAGACATTCAATTAGGAACATTTGGACTTGGGGATCATCATTTGTATCCATATTCAATTTATCACCCATATCCTTTCACTGTTGCAGGGTCGTCACCTTTTTATCATGGACTTGGATGGCCTCAACTTGTTGCCCGTCCAAGCTATGACAACCCATTTGGGATGATCAATAACTCTGCTTGGGCTACCCAAACTCCACTGAATCATAATGTGGGATTTGGAAATCATGAACTTAATAATCAGCTGCAGGTTCCTTCATTTGGTGTTGCTCTTAACAATAATGTGCTAAGGGGAAATACCAATCATGATGACCCAAATAGCCACCAAATTTCAACCTCATTCCTTGATTTGTCCCTAAAACTTTAG 642 0.4081 MSETLRFGDDVTRDNKKVKRKMDDVIAVDSETSLSLSLGGGRSGESSSKSLKIHEELREYPCKFCNKKFSSSQALGGHQGAHRRERVLARIEKDIQLGTFGLGDHHLYPYSIYHPYPFTVAGSSPFYHGLGWPQLVARPSYDNPFGMINNSAWATQTPLNHNVGFGNHELNNQLQVPSFGVALNNNVLRGNTNHDDPNSHQISTSFLDLSLKL 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g01635 213 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 29 213 IPR044246 GO:0009788
Mepo3g01635 213 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Mepo3g01635 213 SUPERFAMILY beta-beta-alpha zinc fingers 58 87 IPR036236 -
Mepo3g01635 213 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 87 IPR013087 -
Mepo3g01635 213 Gene3D Classic Zinc Finger 44 98 - -
Mepo3g01635 213 Pfam C2H2-type zinc finger 60 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g01635 Mepo-Chr3 24298432 24299073 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g01635 34 146 C2H2 Transcription Factor Family AT1G24625 38.261 1.99e-13 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo3g01635 zf-C2H2_6 2.5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g01635 - - mtr:25486990 287.345