Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g01617 ATGGAGGTTTATCCTAAGAAAAAAGCATCGATCGAGGCATTAAAGGAGTTGTCAAGGAAAAAGAAGATTGCTGCAAGTGGAGATAACTCAGAATCTGGAGCTGCAGGTCAAGGAGTGGGTGAAGCGAAAAGGGCTTTGTATCATTGCAATTACTGTAATATCGATATTACAGGAAAAATCCGAATTAAGTGTGCCGTGTGCCCAGATTTTGATTTATGTGTTGAGTGCTTTTCTGTTGGAGCTGAGCTGACACCCCACCAAAGCAATCATGCTTACAGGGTTATGGATAATCTGTCTTTCCCTCTCATTTGCCCCGACTGGAACGCAGATGAAGAAATTTTGCTTCTAGAGGGACTTGAAATGTATGGCATGAATAACTGGGAAGAAGTTGCTGTGCATGTTGGAACAAAGAACAAAGAGGCATGCATAGAACACTATAGGATTGTGTACTTGGACTCGCCATGCTTCCCTCTTCCGGACATGTCTTATGTTGTTGGAAAAAGCAGAGAAGAACTTCTTGCTATGGGGAAAGGGCAAGGTGATGACAAGAAAGGATCGGATTCTGGGCCCTCGGTCAAGACACATGCTGCAACTAGAACTAACCAAAAGGCATCCAATAGAGGCCGGGGAAAAGGTTTCTTTTTGTCATTGACAGATTCTTCAAGAAATTCTGGAGGAAATAAGCCAAAATCCTCAAGAAATGACGGCCCTTCTTTGGTTGAAGCCAGTGGTTATAACCCGAAAAGGCAGGAATTTGATATTGAGTATGATAATGATGCTGAGCAATTACTCGCTGATATGGAGTTTAACGACTCTGACACTCCGGAGGAGATAGAGATCAAACTTCGTGTGATACGCATCTATAATAAAAGGCTTGATGAAAGAGAGCGCAGGAAGAAATTCATACTTGAAAGGAATTTGCTATATCCAAATCCATTTGAGAAGGATTTAACGCCCGAGGAAAAGGCAATATGTCGTCAATATGATGTGTTCATGCGCTTTCATACTAAGGAAGCACACTATGAATTGCTTAGAACCGTTATCTCTGAACACAGAACTAAGAAAAAAATTCAAGAGATTAAGGAAGCTCGTGCTGCTGAAAAAAAGAGAAGAACTGAAGCTGAAGAAAGTGCCCTTAGGGCAAGAGAAAGTGCTTATGTGGTCCCGAACAATCGCGGGATTCCAAATGCATTGATGTCTCCAGACTCTGCTGATCCCAGACCTGCAGGGCGAGCTACTTCAAGTTCTGTCAATGAAATGGATGCAACAGGAGCAAATTTACTTTCTGAAGCTGAGAAACGTCTGTGCTGCGAGTTAGGGTTGCCTCCAACTGTGTATCTGAAGATGCAGGAGGACCTGTCGGTGCAAATGATTGCTGGAAACGTCTCTTCAAAATCCGATGCTCATCGGATGTTCCAGATGGATACCGTGAAAGTTGACATGGTGTATGATATGCTTATTAAGAAGGGATTTGGTTCACACTGA 1485 0.4283 MEVYPKKKASIEALKELSRKKKIAASGDNSESGAAGQGVGEAKRALYHCNYCNIDITGKIRIKCAVCPDFDLCVECFSVGAELTPHQSNHAYRVMDNLSFPLICPDWNADEEILLLEGLEMYGMNNWEEVAVHVGTKNKEACIEHYRIVYLDSPCFPLPDMSYVVGKSREELLAMGKGQGDDKKGSDSGPSVKTHAATRTNQKASNRGRGKGFFLSLTDSSRNSGGNKPKSSRNDGPSLVEASGYNPKRQEFDIEYDNDAEQLLADMEFNDSDTPEEIEIKLRVIRIYNKRLDERERRKKFILERNLLYPNPFEKDLTPEEKAICRQYDVFMRFHTKEAHYELLRTVISEHRTKKKIQEIKEARAAEKKRRTEAEESALRARESAYVVPNNRGIPNALMSPDSADPRPAGRATSSSVNEMDATGANLLSEAEKRLCCELGLPPTVYLKMQEDLSVQMIAGNVSSKSDAHRMFQMDTVKVDMVYDMLIKKGFGSH 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g01617 494 SMART sant 103 152 IPR001005 -
Mepo3g01617 494 SUPERFAMILY Homeodomain-like 411 491 IPR009057 -
Mepo3g01617 494 ProSiteProfiles Myb-like domain profile. 107 150 IPR001005 -
Mepo3g01617 494 ProSiteProfiles SANT domain profile. 102 154 IPR017884 -
Mepo3g01617 494 CDD SANT 122 147 IPR001005 -
Mepo3g01617 494 MobiDBLite consensus disorder prediction 176 244 - -
Mepo3g01617 494 Gene3D - 40 95 IPR043145 -
Mepo3g01617 494 Coils Coil 357 377 - -
Mepo3g01617 494 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 154 IPR017930 -
Mepo3g01617 494 SMART zz_5 43 87 IPR000433 GO:0008270
Mepo3g01617 494 Gene3D - 409 492 IPR036388 -
Mepo3g01617 494 ProSitePatterns Zinc finger ZZ-type signature. 49 76 IPR000433 GO:0008270
Mepo3g01617 494 FunFam Transcriptional adapter 2 409 493 - -
Mepo3g01617 494 MobiDBLite consensus disorder prediction 191 207 - -
Mepo3g01617 494 SUPERFAMILY Homeodomain-like 100 152 IPR009057 -
Mepo3g01617 494 PIRSF Txn_adaptor_ADA2 34 385 IPR016827 GO:0003713|GO:0006357|GO:0035065
Mepo3g01617 494 PIRSF Txn_adaptor_ADA2 366 494 IPR016827 GO:0003713|GO:0006357|GO:0035065
Mepo3g01617 494 MobiDBLite consensus disorder prediction 216 239 - -
Mepo3g01617 494 Gene3D - 105 150 - -
Mepo3g01617 494 MobiDBLite consensus disorder prediction 392 418 - -
Mepo3g01617 494 FunFam Transcriptional adapter 2 100 152 - -
Mepo3g01617 494 Pfam Myb-like DNA-binding domain 106 147 IPR001005 -
Mepo3g01617 494 ProSiteProfiles SWIRM domain profile. 408 494 IPR007526 GO:0005515
Mepo3g01617 494 FunFam Transcriptional adapter 40 95 - -
Mepo3g01617 494 SUPERFAMILY RING/U-box 47 110 - -
Mepo3g01617 494 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 47 489 - -
Mepo3g01617 494 Pfam Zinc finger, ZZ type 46 87 IPR000433 GO:0008270
Mepo3g01617 494 ProSiteProfiles Zinc finger ZZ-type profile. 44 100 IPR000433 GO:0008270
Mepo3g01617 494 CDD ZZ_ADA2 47 95 IPR041983 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g01617 Mepo-Chr3 24050161 24054804 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g01617 18 492 EF-hand Containing Proteins AT3G07740 42.402 2.09e-133 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mepo3g01617 Myb_DNA-binding 8.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g01617 K11314 - gmx:100811887 654.825