Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g01599 ATGATGATGAATAATGGTGAAGAAGATGAACTCTATGAACAGTTATGGAAGGCTTGTGCTGGTCCTCATGTTGAAGTTCCTCGTGCTGGTCAAAGAGTTTTCTATTTTCCTCAAGGACACATGGAACAATTAGAAGTATCAACAAATCAGGAACTAAATCAGAGGATTCCATTGTTCAAACTTCCCAACAAGATCCTTTGTCGTGTTGTAAATGTTCATTTACTGGCTGAACAAGAAACAGATGAGGTTTATGCACAGATAACTCTGGTACCAGAATCTAATCAAACTGAGCCTACAAGCCTTGATCCTTGTCCTGCTGAACCTCCAAGACCAAGAACTCACTCCTTCTCCAAGGTCTTAACTAACTCCGATACAAGTACTCATGGTGGCTTTTCTGTTCTTCGGAAGCATGCCACTGAATGTCTTCCCTCACTGGATATGTCCCAATCTACTCCAACTCAGGAATTGGTTGCCAAGGATCTTCACAATTATGAGTGGCACTTTAAGCACATATTTAGAGGTCAACCACGTCGACACTTGCTCACAACTGGATGGAGTACTTTTGTGACTTCCAAGAGATTAGTTGCTGGAGATACGTTTGTGTTTCTGAGAGGGCACAATGGAGAATTACGCGTTGGCGTGAGGCATCTTGCTTCTCCACAAAGCTGCATGCCTTCATCTGTGATTTCTGGTCAGAGCATGCACCTTGGAGTCCTTGCAACCGCATCTCATGCTGTTGCAACTCAAACTCTTTTTGTAGTATACTACAAGCCCAGGATGAGCCAGTTCATTATAAGTGTGAATAAGTATATGGAAGCTATCAACCAAAAATTTAATGTTGGCATGAGGTTTAAGATGAGTTTTGATGGGGATGATTCTCCTGAGACAGACAAAAGATTTTCCGGCACAATAATTGGACAAGAGGATATTTCTTCACACTGGTTGAATTCAAAATGGAGATCACTCAAGGTTCAATGGGATGACCCTGCATCGATTCCAAGACCTGATAGAATTTCACCATGGGAGATAGAACCCCTTATGGCTTCTGTTCCTACATCTATTCAACCTGCTGCTGCAAAATATAAAAGGCCTAGGCTACCTAGCGACGTTCCAGATTTTGGAGACACAACAGTAGGTGACTCTACTTACTGGGAAGCTGGGCTGACACAATCAGATGTAACACAAGCTAATAATGTTATGTCTGAAAACATAAGGAGTGACGGTATGCATTTGTGGCATCATAAGCAAACTGATAATAGCAGCAGCAATGGTATATCAAGGAATCCGACTGACGGAAGTTGGCTATCTTCTCCTCATTCAAGTGGCCCTTCTCATTTGTGTCAGGACATATCTGATGATAGCAAGAGTGTTGCAGTCTCGGCTTGGCCTATTTCAAAAACTCACTCAGAAATATTGAACAACAATGATCATTTGACTGACCAGGTTGTCAAGGAGAACAAAGCGGAGGCTGCTGCAAGCTGTAGATTGTTCGGGATTGATCTTAATGATCCTCGCACGAACACTCAGAAGGTGTCTGAGTATGCAGCAAATGTATTTGGAGTCACCTCTGAGGGATGCGTTGCCACTCCCATGTCAAGAACTGATGCAGACAAAAATAAGTTTGATATCTCAAAGGCTTCAAAGGAAAGGAAACAAGAACAGCTACCGATATCTCCAAATGAAACACAAAGCAAGCAAACCAATAGCAGAAGTTGCACTAAGGTTCAAATGCAGGGTGTTGCAGTGGGTCGTGCGGTGGACTTGACCGCGTTGGATGGTTATGATCAACTTATTGATGAATTGGAGAAGCTGTTTGACATAAAGGGACAGATCCAGCCTAGGAATAAGTGGGAAATTGTCTTCACTGATGATGAAGGAGATATGATGCTTGTTGGCGATGATCCATGGCCGGAATTTTGCAATATGGTGAGAAGAATCTTCATTTGTTCCAGCCAAGATGTGCACAAAATGAGCTCAGGGACCAAATTACCTATCTCATCACTAGAAGAAACTGTAATAAGCTCAGACACAGCTGAGATATGA 2043 0.4254 MMMNNGEEDELYEQLWKACAGPHVEVPRAGQRVFYFPQGHMEQLEVSTNQELNQRIPLFKLPNKILCRVVNVHLLAEQETDEVYAQITLVPESNQTEPTSLDPCPAEPPRPRTHSFSKVLTNSDTSTHGGFSVLRKHATECLPSLDMSQSTPTQELVAKDLHNYEWHFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGHNGELRVGVRHLASPQSCMPSSVISGQSMHLGVLATASHAVATQTLFVVYYKPRMSQFIISVNKYMEAINQKFNVGMRFKMSFDGDDSPETDKRFSGTIIGQEDISSHWLNSKWRSLKVQWDDPASIPRPDRISPWEIEPLMASVPTSIQPAAAKYKRPRLPSDVPDFGDTTVGDSTYWEAGLTQSDVTQANNVMSENIRSDGMHLWHHKQTDNSSSNGISRNPTDGSWLSSPHSSGPSHLCQDISDDSKSVAVSAWPISKTHSEILNNNDHLTDQVVKENKAEAAASCRLFGIDLNDPRTNTQKVSEYAANVFGVTSEGCVATPMSRTDADKNKFDISKASKERKQEQLPISPNETQSKQTNSRSCTKVQMQGVAVGRAVDLTALDGYDQLIDELEKLFDIKGQIQPRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVHKMSSGTKLPISSLEETVISSDTAEI 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g01599 680 MobiDBLite consensus disorder prediction 414 452 - -
Mepo3g01599 680 MobiDBLite consensus disorder prediction 556 572 - -
Mepo3g01599 680 Pfam Auxin response factor 242 323 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mepo3g01599 680 SUPERFAMILY DNA-binding pseudobarrel domain 103 245 IPR015300 -
Mepo3g01599 680 MobiDBLite consensus disorder prediction 94 121 - -
Mepo3g01599 680 FunFam Auxin response factor 114 218 - -
Mepo3g01599 680 ProSiteProfiles B3 DNA-binding domain profile. 116 218 IPR003340 GO:0003677
Mepo3g01599 680 MobiDBLite consensus disorder prediction 415 452 - -
Mepo3g01599 680 Pfam AUX/IAA family 617 654 IPR033389 -
Mepo3g01599 680 Pfam AUX/IAA family 549 606 IPR033389 -
Mepo3g01599 680 FunFam Auxin response factor 277 350 - -
Mepo3g01599 680 Pfam B3 DNA binding domain 116 215 IPR003340 GO:0003677
Mepo3g01599 680 MobiDBLite consensus disorder prediction 547 572 - -
Mepo3g01599 680 FunFam Auxin response factor 565 658 - -
Mepo3g01599 680 CDD B3_DNA 114 215 IPR003340 GO:0003677
Mepo3g01599 680 Gene3D - 277 350 - -
Mepo3g01599 680 SMART B3_2 116 218 IPR003340 GO:0003677
Mepo3g01599 680 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 658 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mepo3g01599 680 Gene3D - 113 217 IPR015300 -
Mepo3g01599 680 Gene3D - 565 658 - -
Mepo3g01599 680 SUPERFAMILY CAD & PB1 domains 568 646 - -
Mepo3g01599 680 ProSiteProfiles PB1 domain profile. 570 651 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g01599 Mepo-Chr3 23714281 23719136 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g01599 2 663 B3 DNA Binding Superfamily AT4G23980 57.015 0.0 686
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mepo3g01599 AUX_IAA 8e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g01599 K14486 - gmx:100803911 987.638
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g01599 3 23714281 23719136 Mepo2g00641 2 7667807 7673060 PCT