Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g01515 ATGGCGGAACCCAAGGGTTTCACCGTTCTTCTCCACAACCTCATCGACATTGCCACCGAAATCTCTCAAATCTCCACCTTCAATCCCTTAATCAAAACCCATTCCTTTGATCTCAGCCGTAGACTCAATTTCCTTCTTCCTCTCTTTCATCACCTTCTCAACGACGTCGTTTTTGTTCCCTCTGAAACCCTAGTTTCGCTTCAACATGCCTTTGTCTCTGCAAAGGAATTGCTTCTTTTTTGCTCACAATCGAGTCAGCTCTACATGATATTGGAGAGGGAGAAAATTAAGTGTAAATTCAGCGATCTCGCTTCACAATTTGAACAAGCTATAAGCGGGGTTTCATGTGATAAACTTGATATTTCTGAGGAGCTCAAAGAGCAGGTTGCACTTGTACTTGCTCAGTTTAGAAGGGCCAAAGAGCATTTTGATCCACCTGGTCTTGAGCTTTATGAGCATCTGCTGTCTATCTATAACCAGAGCTGCGATGTGAATACTGAACTAGCTGCACTACGTTTAATCTGTGAAAAGCTAAAATATGTGAGTGTGGAAGATATCAAACAAGAGTCACTGGCTCTACATAAGATGATTGTTGATGAGGGTGGTTGTTATGGGAAAAGTGCGCAAAGGTTGTCAATGGTGCTGAAAAAAATTGAAGAGTTTTTGTTGAAGGAATCTGAAAACAATGGAGGTGGTTGTTTTGAGAAAAGCACACAGGTTTTGTTGAGTGGGGATTTGCCTCCTCACACTGATGAGACATGCGTGAAATCAGGTTGTCAGTCACCAGTTGTGCCAGAGGAGTTTCGCTGCCCAATATCTCTTGACCTAATGAAAGATCCTGTTATCATTTCCACAGGGCAGACATATGAACGAGCTTGCATAAAGAAATGGATTGATGCAGGGCATCGAACATGTCCCATCACTCAGCAGATTCTTTCCAGCCCCACCCTCATACCTAACCATGCTTTATACAGCCTGATTTCAAATTGGTGCGAGACAAATGGAGTGGAACCACCTAGAAGGGTAGGAAACTTCTGGCTCTGTAAGGAAACATCAGACGGCTATTCTGAATTGATAAATCTTGATACCTTAATGAGGAAACTTACTTGCAGTAATGTTGAGGATCAGCGTTGTGCAGCAGGGGAGCTCCGTCTTCTTGCCAAACACAACAGTCAAAATCGAAAGTTGATTGGTGAAGCTGGTGCTATACCCCTCCTTGTTGTTCTCCTCTATGTGCCTGATGCTATCACCCAGGAGCAAGCTGTTACTGCTCTTCTCAATCTATCTATCTGCGATGAAAACAAAGAGCGCATCATGGCTTCCGAGGCTTTGCCGGGAATCCTTCATGTGCTAAAAAATGGCTGTATGGCAGCTCGTGAAAATGCAGCAGCCACCTTTTTCAGCCTCTCTGCTACGGATCAGAACAAAGTGGCAATTGGTGCATCTGGAGCAATCGAGGCACTAGTTACTCTCTTCTGTGAAGGAAGTCAAAGAGGAAAAGTTGATGCTGCAACAGCACTATTCAAACTCTGTTTATACCATGGGAACAAAGGCCGTGTTATTAGGGCCGGTATTGTGCCTAAGTTGATTGAAATGTTAATGGCGGGGGAGATGAGGGATGAGGCATTGGCAATCATGGATATAATAGTTAGCCACCCTGATGGAAAAGCTGCAATTGTATCTGCCAATGCTATTTCCACTTTGGTAGAATTAATCATTAATGGATCTTCTAAGAACAAAGAGAATGCAACTTCAGTGCTTGTGCACCTCTGTAGGGGAAACTCACTACACCGATCAACCGTCACTTCACTCGGAGTGATCAATCCTCTCTTGGAACTGGCAAAAAACGGCTCAGAAAGGGGTAAGCGAAAAGCTGCACAACTTCTTGAGTTGTTGGACATTTAG 1905 0.4383 MAEPKGFTVLLHNLIDIATEISQISTFNPLIKTHSFDLSRRLNFLLPLFHHLLNDVVFVPSETLVSLQHAFVSAKELLLFCSQSSQLYMILEREKIKCKFSDLASQFEQAISGVSCDKLDISEELKEQVALVLAQFRRAKEHFDPPGLELYEHLLSIYNQSCDVNTELAALRLICEKLKYVSVEDIKQESLALHKMIVDEGGCYGKSAQRLSMVLKKIEEFLLKESENNGGGCFEKSTQVLLSGDLPPHTDETCVKSGCQSPVVPEEFRCPISLDLMKDPVIISTGQTYERACIKKWIDAGHRTCPITQQILSSPTLIPNHALYSLISNWCETNGVEPPRRVGNFWLCKETSDGYSELINLDTLMRKLTCSNVEDQRCAAGELRLLAKHNSQNRKLIGEAGAIPLLVVLLYVPDAITQEQAVTALLNLSICDENKERIMASEALPGILHVLKNGCMAARENAAATFFSLSATDQNKVAIGASGAIEALVTLFCEGSQRGKVDAATALFKLCLYHGNKGRVIRAGIVPKLIEMLMAGEMRDEALAIMDIIVSHPDGKAAIVSANAISTLVELIINGSSKNKENATSVLVHLCRGNSLHRSTVTSLGVINPLLELAKNGSERGKRKAAQLLELLDI 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g01515 634 Pfam U-box domain 264 334 IPR003613 GO:0004842|GO:0016567
Mepo3g01515 634 Coils Coil 624 634 - -
Mepo3g01515 634 FunFam RING-type E3 ubiquitin transferase 348 633 - -
Mepo3g01515 634 SMART arm_5 513 551 IPR000225 GO:0005515
Mepo3g01515 634 SMART arm_5 594 634 IPR000225 GO:0005515
Mepo3g01515 634 SMART arm_5 431 471 IPR000225 GO:0005515
Mepo3g01515 634 SMART arm_5 552 592 IPR000225 GO:0005515
Mepo3g01515 634 SMART arm_5 472 512 IPR000225 GO:0005515
Mepo3g01515 634 SMART arm_5 390 430 IPR000225 GO:0005515
Mepo3g01515 634 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 337 IPR013083 -
Mepo3g01515 634 ProSiteProfiles U-box domain profile. 263 337 IPR003613 GO:0004842|GO:0016567
Mepo3g01515 634 SUPERFAMILY ARM repeat 357 632 IPR016024 -
Mepo3g01515 634 SUPERFAMILY RING/U-box 264 339 - -
Mepo3g01515 634 Gene3D - 501 633 IPR011989 -
Mepo3g01515 634 PANTHER U BOX DOMAIN-CONTAINING 34 632 - -
Mepo3g01515 634 SMART Ubox_2 267 330 IPR003613 GO:0004842|GO:0016567
Mepo3g01515 634 Gene3D - 346 500 IPR011989 -
Mepo3g01515 634 Pfam Armadillo/beta-catenin-like repeat 390 429 IPR000225 GO:0005515
Mepo3g01515 634 Pfam Armadillo/beta-catenin-like repeat 553 592 IPR000225 GO:0005515
Mepo3g01515 634 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 401 443 IPR000225 GO:0005515
Mepo3g01515 634 CDD RING-Ubox_PUB 265 317 IPR045210 -
Mepo3g01515 634 FunFam RING-type E3 ubiquitin transferase 263 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g01515 Mepo-Chr3 22401919 22407918 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g01515 12 630 U-box Gene Family AT3G46510 49.120 0.0 603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g01515 - - vum:124836668 743.421