Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g01506 ATGGAGTTACGGTTTTCATCACAGTTCGTTTTCACCATTCTCGCTATAACACTTCTTTTTGCTTTCACCAATGCTGTTGATCATAACGAATCAAGTGTTGTGAATGGAGAAGAGAAGTTGAAGATTCAGAGCTTGAATAATTCATCAATGGCGGAAAGCTTAAGTCATGATGCTATCAACGAGCATGCAGTTGATAATCCAGAGGAGATTGCTTCCATGGTTGATACGACTATACGCAATCACACGGAGAGAAGGAGTCTGAGTTTTTTCTCATGCGGGAGTGGAAATCCAATGGATGACTGCTGGCGCTGTGACAAGCTTTGGTACCGCCGCCGAAAGCGGTTGGCTGATTGTGCCATTGGTTTTGGTCGAAACGCCATCGGTGGCCGTGATGGAAGGTACTACGTTGTTAATAACCCAAGAGACGACGACCCCGTGAACCCAAGACCTGGCACTCTCCGTCACGCTGTCATTCAAGATAGGCCATTGTGGATTGTGTTCAAGAGAGACATGGTGATCACCCTGAAGCAGGAATTGATCATGAACAGTTTCAAGACCATAGATGGTCGTGGTGCGAATGTTCATATTGCCTTTGGAGCATGCATTACTATTCAATTTATCACCAATGTCATCATCCATGGTGTCCATATCCATGATTGTAAGCCGACTGGGAATGCTATGGTTCGAAGTTCCCCTTCCCATTTTGGATGGAGGACAATGGCTGATGGTGATGGCATTTCCATCTTTGGTTCCAGTCATATTTGGATTGACCACAACTCTCTGTCTAATTGCGCTGATGGTCTTGTTGATGCTATTATGGGATCCACCGCCATTACCGTTTCCAATAACTACTTCACCCACCACAATGAGGTTATGCTATTGGGCCACAGTGACTCATATGTTCGTGACAAGCAGATGCAAGTAACCATTGCATACAACCATTTTGGGGAGGGGCTTATCCAAAGGATGCCAAGATGCAGACACGGGTATTTCCACGTGGTAAACAATGACTATACACACTGGGTGATGTATGCTATTGGAGGCAGTGCTGAGCCCACAATTAACAGCCAAGGCAACAGATACCTTGCCCCTCAGAACCCTTTTGCTAAGGAGGTGACAAAGAGGGTGGATACAGGGTCCGGAGTATGGAAGGGTTGGAATTGGAGGTCTGAGGGAGACCTTTTGCTAAATGGAGCTTTTTTCACTCCATCAGGAAGAGGAGCTGCAGCAAGCTATGCTAGAGCCTCAAGTTTAGGGGCCAAATCATCTTCTTTAGTTGGTACTTTAACTGCAGGTGCTGGTGTTATTAAATGTCGCAGGGGTGGCATGTGTTAA 1335 0.4599 MELRFSSQFVFTILAITLLFAFTNAVDHNESSVVNGEEKLKIQSLNNSSMAESLSHDAINEHAVDNPEEIASMVDTTIRNHTERRSLSFFSCGSGNPMDDCWRCDKLWYRRRKRLADCAIGFGRNAIGGRDGRYYVVNNPRDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAFGACITIQFITNVIIHGVHIHDCKPTGNAMVRSSPSHFGWRTMADGDGISIFGSSHIWIDHNSLSNCADGLVDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSAEPTINSQGNRYLAPQNPFAKEVTKRVDTGSGVWKGWNWRSEGDLLLNGAFFTPSGRGAAASYARASSLGAKSSSLVGTLTAGAGVIKCRRGGMC 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g01506 444 PANTHER PECTATE LYASE 18-RELATED 62 441 IPR045032 GO:0030570
Mepo3g01506 444 Pfam Pectate lyase 178 359 IPR002022 -
Mepo3g01506 444 SMART amb_all 170 367 IPR002022 -
Mepo3g01506 444 PRINTS Pollen allergen Amb family signature 118 135 IPR018082 -
Mepo3g01506 444 PRINTS Pollen allergen Amb family signature 142 167 IPR018082 -
Mepo3g01506 444 PRINTS Pollen allergen Amb family signature 322 341 IPR018082 -
Mepo3g01506 444 PRINTS Pollen allergen Amb family signature 242 263 IPR018082 -
Mepo3g01506 444 PRINTS Pollen allergen Amb family signature 415 438 IPR018082 -
Mepo3g01506 444 PRINTS Pollen allergen Amb family signature 386 410 IPR018082 -
Mepo3g01506 444 PRINTS Pollen allergen Amb family signature 344 363 IPR018082 -
Mepo3g01506 444 PRINTS Pollen allergen Amb family signature 178 194 IPR018082 -
Mepo3g01506 444 SUPERFAMILY Pectin lyase-like 73 439 IPR011050 -
Mepo3g01506 444 Gene3D - 95 437 IPR012334 -
Mepo3g01506 444 FunFam Pectate lyase 95 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g01506 Mepo-Chr3 22209020 22214839 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g01506 31 444 Polysaccharide Lyase AT4G13710 75.472 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g01506 K01728 - gmx:100809277 769.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g01506 3 22209020 22214839 Mepo3g01506 3 22209020 22214839 ECH