Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g01394 ATGTCAGGTTCAGAGAACCGTCGAGAGAAGTTTGCTGGCTTGACTCTTGACGACGTCTTAGCCAATCAAAAGAGATTAGCAACTGCACCACCTAGCAAACCATCACCTCCGAAGAGTCGAACGCTTGTAGACACCATCAAAGAAGACGAGACCAACAAAAAAGACCGTAGATCTTGGAAAGCCTTCAAGGACAAGATTCGACTCAAACGCACTGGCTCTGCTTGGACATCAACAATACATATTCCAACTTCAGATATTCCTATCCAAAATCCTAACAGTAGAAGTTTTTCTCAATTCGGTCGTCGCAACTCAGTCCGAATCCAAACCCACCTCGACGACTCAGACATGTCAACCCAATCCATGACCCGCCAAGTGGACGACCTTGACCCATCGGAGGAGTCCAATGCTCCGGCCACTAGACCACAGTTCACTCGCCGCATCTCCACACGTCTCTCCGTCGAATCCCCAGAAAACTCCTCTGGCGGAGGAAATCTCCGGCCGCAACTGTCACGAAGAGATTCCACCAATGTGTCATCAGAGCCGTTTCACCGAGGACGTGTAGTGACTTTTCGAGACAGCTTCGATGAGGATGATCCCGACGATGATGACAACAAGAAACCAGAGACAGGGAGGGCACTTTCGGCAAGGGAGGCAGTGGCAGCCCAGGAAGCGGCAGAAGCTGCTGCAGCAACAGAGGCGGAGACTTCAGAAGGGGCTCCAATGATGATGTCACTAATGGACTTGCTGGAGGAGACTGATAGGGAGATGGGATTGGAAGGATCAAGGTATATTTTGAGTGATGAAAAGGACTTCAACGATGATGAAGAATGTGAAGATGATGAGGATGGAGAAGGTGCCATGGAAGAGACTTGTTGTATTTGCATGGTCAAACATAAGGGTGCTGCTTTTGCTCCTTGTGGCCACAGTTTCTGCAGGATGTGTTCAAGGGAGCTTATGGTGGCCAAGGGAAACTGTCCACTCTGCAACAATTTCATTGTAGAGATTCTCGAGATATTCTGA 1020 0.4912 MSGSENRREKFAGLTLDDVLANQKRLATAPPSKPSPPKSRTLVDTIKEDETNKKDRRSWKAFKDKIRLKRTGSAWTSTIHIPTSDIPIQNPNSRSFSQFGRRNSVRIQTHLDDSDMSTQSMTRQVDDLDPSEESNAPATRPQFTRRISTRLSVESPENSSGGGNLRPQLSRRDSTNVSSEPFHRGRVVTFRDSFDEDDPDDDDNKKPETGRALSAREAVAAQEAAEAAAATEAETSEGAPMMMSLMDLLEETDREMGLEGSRYILSDEKDFNDDEECEDDEDGEGAMEETCCICMVKHKGAAFAPCGHSFCRMCSRELMVAKGNCPLCNNFIVEILEIF 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g01394 339 MobiDBLite consensus disorder prediction 109 125 - -
Mepo3g01394 339 Pfam Zinc finger, C3HC4 type (RING finger) 288 332 - -
Mepo3g01394 339 CDD RING-HC 289 328 - -
Mepo3g01394 339 MobiDBLite consensus disorder prediction 22 55 - -
Mepo3g01394 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 265 339 IPR013083 -
Mepo3g01394 339 MobiDBLite consensus disorder prediction 109 239 - -
Mepo3g01394 339 SUPERFAMILY RING/U-box 290 335 - -
Mepo3g01394 339 PANTHER OS01G0917900 PROTEIN 7 339 - -
Mepo3g01394 339 SMART ring_2 291 328 IPR001841 -
Mepo3g01394 339 MobiDBLite consensus disorder prediction 135 182 - -
Mepo3g01394 339 ProSiteProfiles Zinc finger RING-type profile. 291 329 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g01394 Mepo-Chr3 20683954 20685622 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g01394 1 339 C3H Transcription Factor Family AT3G07120 36.533 1.31e-57 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g01394 - - gmx:100795449 399.053