Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g01317 ATGGCAACTTCAGAGAATCAAGTTCCTCCGGCACCTGATGTTGTTGGTCATGCCTTTGTTGAACAGTACTACTACATGTTGCATGAAAGCCCTGAGCATGTGCATAGGTTTTACCAAGATGTCAGTAAGCTTGGTCGTCCTGAACCAGATGGTATCATCGGCATCACAACCACAATGGCCGAAATTGACAAGAAGATACTGTCAATGGGTTATAGTGAACTTAGTGCGGAGATCCTTTCTGTGGATGCACAAGAGTCTTTTGGTGGGGGAGTCATTGTCTTGGTCACTGGGTTTATGATAGGAAAGGATAACATTAAGCAGAAATTTACTCAATGTTTCTTCCTTGCTCCTCAAGAGAAAGGCTACTTTGTTTTGAATGATATTTTCAGATATGTTGATGAAAATGAAATCAAGGAACCTGATCATGACATTGGATCTCCTGCCTCTCCTGACAATGTGTTGGATCCTCCTGTGCTGGAGACACAAGTTCCAGAGCAAATATCCGTGACTGCTGAGGATGGTGATAGGGAAGAACTAGAAGTCTACAATCCAGAAAATGGGCAAGTGTCTGTTGAAGAAGTGGAAGCTCCTGTTCCTGAGGTTCTTGTTGAAATTCCTAATGATTCACAGAAAGCAGCTGGTTTTGATCATGTTCCTGATGATTCACAGAAGGTAGCTGAATTGGCATCCCAAATTGAAGAAGTGCCGAAGAAATCATATGCCTCCATTCTTAAGGTCATGAAAGAGGCTGCTGCTCCGTCCTCCGTAATGACAGCTGCTTCTGTGAGAACTGCCAATAAGATTCAAGAACAGCAGGGTGCTGCTGCACCTTCACCATCCAGTGTGCCAGAAACAAATGGTTCTAGTTTAAGTACTAATGAAGGTGGAAACAATCAAGAAACTGAAGGTCTGATGAACCATAGATATATGTCTGAGGGCTATTCAATTTATTTGAGAGGGCTGCCTGGAAATGCTACACATGCCCTTGTTGAGAATGTGTTCAAGAAGTTTGGCCCTATCAAAAGTGGCGGTGTTCAAGTTAGGACAGCAAAGGGATTTCACTTTGGCTTTGTGGAGTTTGAAGAGGAAAGTGCTGCGCTAAGTGCGATTGAGGCTTCACCAATTCTGATCAATGACCGTCACGTTGTGGTAGAGGAAAAGAGGTCAACTAATCGAGGTTATAGCAGAGGGCATGGAAACTATGCAAGGCTGCCCAGTTTCAGGGATGAGGGAGCAAGAGGGCATGGAAACTATGGAAATAGCCGAAGTTTTGGCCGTGGAGACTATAACGGTCGTGGTGACTATAACGGTCGCGGAGATTTCAATGGTCGTTCAGACTTTAATGGAAGAGGGGAATATGGATATGGATATAGGAATGGCAATCGGGGAGGGTTTTCTAGTCGTGGAGGTGATGGATATCAGAGAAACGATCACATGGGAACCAATGGTGGCCGCATGAATCGTACTGGTGGGTCTTCTGTTAATTCAGCAACCAAATCTACCACTTCTCCTCGTGTTCCGGCCTCTGCTTGA 1533 0.4468 MATSENQVPPAPDVVGHAFVEQYYYMLHESPEHVHRFYQDVSKLGRPEPDGIIGITTTMAEIDKKILSMGYSELSAEILSVDAQESFGGGVIVLVTGFMIGKDNIKQKFTQCFFLAPQEKGYFVLNDIFRYVDENEIKEPDHDIGSPASPDNVLDPPVLETQVPEQISVTAEDGDREELEVYNPENGQVSVEEVEAPVPEVLVEIPNDSQKAAGFDHVPDDSQKVAELASQIEEVPKKSYASILKVMKEAAAPSSVMTAASVRTANKIQEQQGAAAPSPSSVPETNGSSLSTNEGGNNQETEGLMNHRYMSEGYSIYLRGLPGNATHALVENVFKKFGPIKSGGVQVRTAKGFHFGFVEFEEESAALSAIEASPILINDRHVVVEEKRSTNRGYSRGHGNYARLPSFRDEGARGHGNYGNSRSFGRGDYNGRGDYNGRGDFNGRSDFNGRGEYGYGYRNGNRGGFSSRGGDGYQRNDHMGTNGGRMNRTGGSSVNSATKSTTSPRVPASA 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g01317 510 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 11 478 IPR039539 -
Mepo3g01317 510 CDD RRM_SF 316 385 - -
Mepo3g01317 510 Gene3D - 5 135 - -
Mepo3g01317 510 Gene3D - 256 402 IPR012677 -
Mepo3g01317 510 MobiDBLite consensus disorder prediction 268 301 - -
Mepo3g01317 510 Pfam Nuclear transport factor 2 (NTF2) domain 15 131 IPR002075 -
Mepo3g01317 510 FunFam Nuclear transport factor 2 family protein 6 135 - -
Mepo3g01317 510 MobiDBLite consensus disorder prediction 464 510 - -
Mepo3g01317 510 MobiDBLite consensus disorder prediction 388 429 - -
Mepo3g01317 510 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 316 372 IPR000504 GO:0003723
Mepo3g01317 510 ProSiteProfiles Nuclear transport factor 2 domain profile. 15 131 IPR018222 -
Mepo3g01317 510 SMART rrm1_1 315 385 IPR000504 GO:0003723
Mepo3g01317 510 MobiDBLite consensus disorder prediction 480 510 - -
Mepo3g01317 510 SUPERFAMILY NTF2-like 12 132 IPR032710 -
Mepo3g01317 510 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 389 IPR000504 GO:0003723
Mepo3g01317 510 SUPERFAMILY RNA-binding domain, RBD 311 388 IPR035979 GO:0003676
Mepo3g01317 510 CDD NTF2 12 133 IPR018222 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g01317 Mepo-Chr3 19743287 19748713 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g01317 316 384 Eukaryotic Initiation Factors Gene Family AT2G36660 35.211 9.68e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g01317 K24983 - mtr:25498406 840.876