Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g01309 ATGACTAGAAAAAAGGTGAAACTTTCCTCTAATGTAAATGATGCTAGTATAAAAGCAACATACAAGAAAAGGAAGAATGGTGTATTGAATAAAGTTGATGAACTAAGCACCCTTCGTGGAATTGAAGCTTGTGCTATAGTGTATGACCCTTATGAACCACAACTTGAGATTTGGCCATCACCAAAGGGAGTTCAAAGTGCTCTCAAAATCCAGAACTATACATGA 225 0.3644 MTRKKVKLSSNVNDASIKATYKKRKNGVLNKVDELSTLRGIEACAIVYDPYEPQLEIWPSPKGVQSALKIQNYT 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g01309 74 Gene3D - 14 74 IPR036879 GO:0003677|GO:0046983
Mepo3g01309 74 SUPERFAMILY SRF-like 1 65 IPR036879 GO:0003677|GO:0046983
Mepo3g01309 74 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo3g01309 74 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo3g01309 74 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 14 50 IPR002100 GO:0003677|GO:0046983
Mepo3g01309 74 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
Mepo3g01309 74 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g01309 Mepo-Chr3 19640905 19641129 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g01309 1 69 Type I MADS-box Gene Family AT3G05860 47.826 3.12e-18 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo3g01309 SRF-TF 3.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g01309 - - lja:Lj0g3v0308399.1 98.2117