Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g01297 ATGGAAAATCATCAATTCTTTTCAAATTCAAACACTCATTTTGATCAATCACAACCATCTTCAATGCCTACATGGCAATCACTTTCATCAGAACAACAGAATCAAGATTGTTTTTACACACCAATATGGGATAAGTCAACAACAGATCAATGTGTTAATCAATTTGATTCAGCACTTAGTTCAATGGTATCTTCACCTGCAGCTTCAAATTCCAACATGTCTAATGACAATTTTGTCATCAGAGAATTGATTGGTAAATTAGGAAACATTGGTAATTGTTCTGATGAGATCTCACAAACATTGGTTGCTGCAAATTCATATATCAATAGCAATAACAATAACAATACTTCATGTTACAACACCCCTTTGAATTCTCCTCCAAAATTGAACATCTCAACAATGGCCATGAATTCTACTGTTGCAGAATTCTCAACTGATCCTGGTTTTGCAGAAAGAGCTGCAAAATTCTCTTGCTTTGGAAGTAGGAGTTTCAATGGAAGAACAACTCAATTGAGTCAAAGTCAAAGATCTACTCCATTGTTGGAAAATGGAAAACTATCTAGAGTTTCAAGTAGTCCATCATTGAAGGAACTTGGATCTCAATCTCAATCTCAAATTGGAATACAAGAGAATATGAATTGTTCTACACAATTGCAGGATCAAATTGAAGTTAACAATTCTCAAGAAGAATCAACAATCTCTGAAAATGGTGTGAAACCTTCTCCTTATGTGAATTCAAGGAAAAGAAAAGTTTCTTCCAAAGGAAAAACCAAAGAAACTTCAACTTCTAGTAACCCTCCAATGGCTTGTGAAGTTGAAGACTCAAATGCAAAGCGTATGAAAACAAATGAAGGTGAAAAAATTGAAAATGGTAAAGTGAAAGCAGAGGAAGAGTCAAAAGGGGGTACAAATAGTAATAATGGAGGTGACGAAAAACAGAATAAGAGCAACTCAAAACCCCCTGAGGCTCCAAAGGATTACATTCATGTCAGAGCAAGAAGAGGTCAAGCTACTGATAGCCATAGTCTTGCAGAAAGAGTTAGGAGGGAGAAAATCAGTGAAAGGATGAAGCTTCTACAAGATCTTGTCCCTGGTTGCAATAAGGTCACTGGAAAAGCACTCATGCTTGATGAAATTATAAACTATGTGCAATCATTGCAGCGTCAAGTTGAGTTCCTATCTATGAAATTGGCCACTGTTAACACCAGGGTGGATTTTAGTGTTGAGAGTCTAATCTCAAAAGATATGTTTCAATCAAATAATTCTTTGGCACACCCAATATTCCCATTAGATTCCTCAGCACCATCCTATTATGGGCAACAACACCAGCAAAACCCAGCAATTCACAATAACATTTCTAATGGAACTGTGACCCACAACTCGGTGGACCCATTAGATGGTGGTTTATGCCAAAACCTTGGCATGCACTTATCTTCACTAAGTGGATTTAATGAAGCTGGCTCCCAGTATCCATTAACGTTCTCTGAGGATGACCTCAACACAATTGTTCAGATGGGATTTGGACAAACTGACAATAGAAAAACACCAATACAATTTCAGAATTTGAACGGCACAAATCAACTACCCCTATGA 1593 0.3691 MENHQFFSNSNTHFDQSQPSSMPTWQSLSSEQQNQDCFYTPIWDKSTTDQCVNQFDSALSSMVSSPAASNSNMSNDNFVIRELIGKLGNIGNCSDEISQTLVAANSYINSNNNNNTSCYNTPLNSPPKLNISTMAMNSTVAEFSTDPGFAERAAKFSCFGSRSFNGRTTQLSQSQRSTPLLENGKLSRVSSSPSLKELGSQSQSQIGIQENMNCSTQLQDQIEVNNSQEESTISENGVKPSPYVNSRKRKVSSKGKTKETSTSSNPPMACEVEDSNAKRMKTNEGEKIENGKVKAEEESKGGTNSNNGGDEKQNKSNSKPPEAPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLATVNTRVDFSVESLISKDMFQSNNSLAHPIFPLDSSAPSYYGQQHQQNPAIHNNISNGTVTHNSVDPLDGGLCQNLGMHLSSLSGFNEAGSQYPLTFSEDDLNTIVQMGFGQTDNRKTPIQFQNLNGTNQLPL 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g01297 530 FunFam Basic helix-loop-helix transcription factor 333 405 - -
Mepo3g01297 530 MobiDBLite consensus disorder prediction 168 205 - -
Mepo3g01297 530 Coils Coil 383 403 - -
Mepo3g01297 530 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 334 405 IPR036638 GO:0046983
Mepo3g01297 530 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 336 386 IPR011598 GO:0046983
Mepo3g01297 530 MobiDBLite consensus disorder prediction 1 27 - -
Mepo3g01297 530 Pfam Helix-loop-helix DNA-binding domain 340 387 IPR011598 GO:0046983
Mepo3g01297 530 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 224 448 IPR024097 GO:0006355
Mepo3g01297 530 MobiDBLite consensus disorder prediction 226 324 - -
Mepo3g01297 530 MobiDBLite consensus disorder prediction 300 314 - -
Mepo3g01297 530 MobiDBLite consensus disorder prediction 226 241 - -
Mepo3g01297 530 Gene3D - 333 407 IPR036638 GO:0046983
Mepo3g01297 530 MobiDBLite consensus disorder prediction 274 299 - -
Mepo3g01297 530 SMART finulus 342 392 IPR011598 GO:0046983
Mepo3g01297 530 CDD bHLH_AtBPE_like 326 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g01297 Mepo-Chr3 19455214 19458707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g01297 1 489 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 44.400 4.30e-110 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo3g01297 HLH 4.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g01297 - - tpra:123889043 861.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g01297 3 19455214 19458707 Mepo1g04467 1 52435501 52439145 PCT