Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g01289 ATGGCAAAACCAGGGGTGTTAGATTCTGATCCAGAGGTGATGGTGAAGAAAGCCTTAGAGTTGAAGAAGGAGTTGAAGAAGCTTGTGAAGTCCATTGTTGATGATGAAGATATAAGCATTGAAGCAATTGATAAAGCTAAAGAAACTCTTTGTGTTCTTAAAGATTTGAAGCTAAGAAAGAAATCTCAATCTTCAAATTCAATGTCTTTTAAGATAAACAAGAATGTTACTTTCCCAGATGAATTCAAATGTCCACTTTCCAAGGAATTTATGAGAGATCCTGTCATTGTTGCTTCTGGTCAGACATATGATAGACCTTTCATTCAAAGATGGTTTAATGCTGGAAATAGGACATGTCCTCAAACTCATCAAGTTCTCTCACACACTCTCCTTACTCCAAATCAACTTGTAAGAGAAATGATAGAAAAATGGTCTAAAAATCAAGGACTTGAATTGTGCAATGCTATTAGTTACATTAGTGATGAAGGTGCTAAAGAAGCTGATCAGAATCATTTTTTATGTTTGCTTGAGAAAATGTCTTCAACACTTTGTGATCAGAAAGAAGCTGCAAAACAACTTAGGTTGTTGACAAAGAAGCATCCTTGTTTTCGAGTACTTTTTTGCGATTTCGAACATGCAATTCCTCAATTGCTTAAGCCAATTTGTGAAGGAGATAGTATTAACCATGAACTTCAAGAAGATGTGATCACAACACTCCTAAATATCTCGATTCATGACAACAACAAGAAACAAGTGGCTGAAATTCCAATGGTAATTCCAATCCTCATGAAGGCATTGAGATGTGGAACAATTGAAACACGAGCCAACGCTGCAGCAACCCTTTTCACGTTATCAGCACTAGACTCAAACAAAGAGCTTATAGGAAAATCCAACGCCTTAAAACCACTTATCGACCTATTGGAAGAAGGGAATCCCTTAGCTATGAAGGATGTTGCTTCAGCAATATTCACTTTATGTATGATGCATGACAACAAAGCAATAGCAGTGAAAGACGGTGCGGTTAGAGTGATTATGGCAAAGATGAAAAACCGAGTTCACGTCGACGAATCACTAGCTATCCTTGCCCTACTTTCGACTCATCAGAAGGCTGTCCTCGAAATGGCAGAGCTTGGAGCTGTCCCTTGTTTGCTAAGCATTATGCGAGAGAGCTCGTGCGAACGCAATAAGGAGAACTGTGTCGCAATCCTTCAAACTATATGTCTTTATGACAGATCCAAGTTGAGGGAAATAAAGGAAGAGGAGAACAGTCACAGAACAATTTCTGAACTTGCAAAAAGTGGAACTTCAAGGGCTAAGAGAAAAGCTAGTGGAATTCTTGAGAGATTGCATAGGGTTGTTAATATCACACACACTGCATAA 1380 0.3841 MAKPGVLDSDPEVMVKKALELKKELKKLVKSIVDDEDISIEAIDKAKETLCVLKDLKLRKKSQSSNSMSFKINKNVTFPDEFKCPLSKEFMRDPVIVASGQTYDRPFIQRWFNAGNRTCPQTHQVLSHTLLTPNQLVREMIEKWSKNQGLELCNAISYISDEGAKEADQNHFLCLLEKMSSTLCDQKEAAKQLRLLTKKHPCFRVLFCDFEHAIPQLLKPICEGDSINHELQEDVITTLLNISIHDNNKKQVAEIPMVIPILMKALRCGTIETRANAAATLFTLSALDSNKELIGKSNALKPLIDLLEEGNPLAMKDVASAIFTLCMMHDNKAIAVKDGAVRVIMAKMKNRVHVDESLAILALLSTHQKAVLEMAELGAVPCLLSIMRESSCERNKENCVAILQTICLYDRSKLREIKEEENSHRTISELAKSGTSRAKRKASGILERLHRVVNITHTA 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g01289 459 Gene3D - 151 454 IPR011989 -
Mepo3g01289 459 FunFam RING-type E3 ubiquitin transferase 78 150 - -
Mepo3g01289 459 ProSiteProfiles U-box domain profile. 77 151 IPR003613 GO:0004842|GO:0016567
Mepo3g01289 459 SUPERFAMILY RING/U-box 76 154 - -
Mepo3g01289 459 CDD RING-Ubox_PUB 79 131 IPR045210 -
Mepo3g01289 459 FunFam RING-type E3 ubiquitin transferase 354 455 - -
Mepo3g01289 459 PANTHER U BOX DOMAIN-CONTAINING 31 448 - -
Mepo3g01289 459 SMART Ubox_2 81 144 IPR003613 GO:0004842|GO:0016567
Mepo3g01289 459 Pfam U-box domain 79 147 IPR003613 GO:0004842|GO:0016567
Mepo3g01289 459 SUPERFAMILY ARM repeat 181 449 IPR016024 -
Mepo3g01289 459 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 150 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g01289 Mepo-Chr3 19329243 19332527 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g01289 140 459 U-box Gene Family AT3G07360 59.692 4.81e-125 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g01289 - - gmx:100777031 693.73