Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g01205 ATGCGAAGGAACAGAAGAACAAAAGCGAAGCTAAGAAGGAATCAGAATCGCAAGCGGAATGCTGATGTGAAACGCGAATCAAGCTACGGAAAGATCATGGCTAGTGAAATTGCTGAGATGATGCCAAGAAAGTTTGTGGAAAAATATGGAAAAGGTCTACCAAAAGCTATATGTGTAGAGACTCCAAATGGTGCAAAATGGAAATTAAATTTGGTAAAAAGTGATGGCAAGATATGGTTTGAGAAGGGTTGGAAAGAATTTGCAGAGTATCATTCTCTAGCTCATGGCCATCTTCTGCTTTTCAGATATGAAAAAACTTCCAAATTTGAGGTACATATTTTTGAAAAGAATGCCTTGGAGATAAACTACTCTATCAAAAGAGTTGAAGCTAAGAAGGTCTCCAATGGTCAAGGAAATAAACCTCCGAATGGTGAAAATCGTAGAGCAGCTCAAAAGAGGAAAGATAACTCCTCCTTTGAATTTCATCAACAATGTGAAATTGGAAGCAGTAGTTGTGTAAAACATGGAAAATCACAGAAGGTCGATGTGCATCAAATTGATAGAATGTCCAAAGGAAAACAAGTGATTACAACTGTTGAGAAAATTACAACTCTTGAAAGAGCAGAGTCTTTCAAAATCTCTAATCCATCCTTTGTTGTTGTCATGGGTGCATCATACGTTGAACACCACTTTCTTCCGAATATACCATCCTTGTTTTGTAAGACACACTTTGATTTGAACAAGAAGAGAGGAGATATTCAACTTCAGGTGTTGAATGGGAGAGTTTGGTCTGCTACGTACTCTATCAGGATGTGCGCTAAAGGTCTAAAATTTGAACTCACAACTGGATGGAAGGCATTTGCAAAGGACAATAACTTGAAAGTTGGTGATGTTTGCAAATTGGAGCTCATCTCTAGCACTATACTTACCTTCATTGTTCATATCTTTAGAGAGACAGACAATGACAACACAAATTGTTTAACATTTCAAAGTAGGATCAATTGA 1005 0.3731 MRRNRRTKAKLRRNQNRKRNADVKRESSYGKIMASEIAEMMPRKFVEKYGKGLPKAICVETPNGAKWKLNLVKSDGKIWFEKGWKEFAEYHSLAHGHLLLFRYEKTSKFEVHIFEKNALEINYSIKRVEAKKVSNGQGNKPPNGENRRAAQKRKDNSSFEFHQQCEIGSSSCVKHGKSQKVDVHQIDRMSKGKQVITTVEKITTLERAESFKISNPSFVVVMGASYVEHHFLPNIPSLFCKTHFDLNKKRGDIQLQVLNGRVWSATYSIRMCAKGLKFELTTGWKAFAKDNNLKVGDVCKLELISSTILTFIVHIFRETDNDNTNCLTFQSRIN 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g01205 334 SUPERFAMILY DNA-binding pseudobarrel domain 215 320 IPR015300 -
Mepo3g01205 334 MobiDBLite consensus disorder prediction 1 27 - -
Mepo3g01205 334 CDD B3_DNA 40 114 IPR003340 GO:0003677
Mepo3g01205 334 ProSiteProfiles B3 DNA-binding domain profile. 41 117 IPR003340 GO:0003677
Mepo3g01205 334 Pfam B3 DNA binding domain 218 318 IPR003340 GO:0003677
Mepo3g01205 334 Pfam B3 DNA binding domain 40 116 IPR003340 GO:0003677
Mepo3g01205 334 CDD B3_DNA 216 317 IPR003340 GO:0003677
Mepo3g01205 334 SMART B3_2 218 319 IPR003340 GO:0003677
Mepo3g01205 334 SMART B3_2 29 117 IPR003340 GO:0003677
Mepo3g01205 334 Gene3D - 195 321 IPR015300 -
Mepo3g01205 334 ProSiteProfiles B3 DNA-binding domain profile. 218 319 IPR003340 GO:0003677
Mepo3g01205 334 PANTHER B3 DOMAIN-CONTAINING 27 313 - -
Mepo3g01205 334 MobiDBLite consensus disorder prediction 1 18 - -
Mepo3g01205 334 SUPERFAMILY DNA-binding pseudobarrel domain 40 124 IPR015300 -
Mepo3g01205 334 Gene3D - 20 118 IPR015300 -
Mepo3g01205 334 MobiDBLite consensus disorder prediction 132 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g01205 Mepo-Chr3 18272430 18275392 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g01205 32 320 B3 DNA Binding Superfamily AT3G18990 27.596 3.64e-28 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mepo3g01205 B3 2e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g01205 - - mtr:120577159 481.1