Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g01199 ATGATGGTTGGGAGAGGTTGCGAAGGTGTGGTTTTTGTGTGGTGGTTTGTGGGGTTTTGTTTTGTTGTGATAAAGGGTGAGGGGTGCCTTGTCGATTTGGTTCTGGAGTCTGATGGACCGATGACTTTTGATTCGAGAGCGGGAGTCAGTTCTTTCGTTCAAGTTTTTGTTTTGGGCTATTTATGGTGTTCTTTCGATGAACCGGAGGTTGAAAGACTCATGGCTAGTGAATTTCCTCATGTGAAGCAATTCCACTTTTTCAAGATCATAACTACTCAAAGCCTTCATGAAGGAAAGCTTATGATTCCAAGAAAGTTTGAAGAGAAATATCGAAATTGTTTACCAAATGTTATATATCTAAAGACTCCAAGTGGTGCAAAGTGGAAATTAGATTTAGTAAAAAGTGATGGCAAGATATGGTTTCAAAAGGGTTGGAAAGAATTTGCTGAGTATCATTCTCTAGCTCATGGCCATCTTCTACTTTTCAAATATGAAAGAACTTCCCATTTTCATGTGCATATCTTTGAAAAGAGTGCCTTAGAGATAAAATACCCTTTCAAAAGAGTTGAAGCTAAAAAGGTCTACAACGTTCAAGGAAATAAACCTCCAAATAATGAAGATTGCAGAGCAAGTCAAAAGAGAAAAGTTAACTCATCCTTTGAGTTTGGGAGTAGTAGTTGTGCTAAAGTTGGGAAATCACAAAAGGTAGCTGTGCATCTTATTGACAGAAAGTTCAAAGGGAAACAAGTGATTACTGCTGAAAGAGTTAGAACTCTTGAAAGAGCAAAATCTTTCAAAACTTGTAATCCATCCTTTGTTGTTGTCATGGGAGCATCATATGTTGAACACCGCTTTACTTTGACTATACCGTCTATGTTTGGTATGAGACACTTCGATTTGGAAAAGAAGAAAGGAGATATTTATTTTCAGGTGTTAACTAGTGGAAGAGTTTGGCCTGCAAGGTATGTAATTAAGATGCGCAGAACAACATTGAAATTTGAACTCACAGGTGGATGGAAGGCATTTGCAAAGGACAATAACTTAAAAGTTGGTGATGCTTGTAACTTTGAGCTCATCTCTAACACTTCACTTACATTCACTGTTCACATCTTTAGAGAGGCAGACAATGACAACACAAATTGTTCAACCTCTCAAAGTAAGATTTGTGTTTAA 1173 0.3743 MMVGRGCEGVVFVWWFVGFCFVVIKGEGCLVDLVLESDGPMTFDSRAGVSSFVQVFVLGYLWCSFDEPEVERLMASEFPHVKQFHFFKIITTQSLHEGKLMIPRKFEEKYRNCLPNVIYLKTPSGAKWKLDLVKSDGKIWFQKGWKEFAEYHSLAHGHLLLFKYERTSHFHVHIFEKSALEIKYPFKRVEAKKVYNVQGNKPPNNEDCRASQKRKVNSSFEFGSSSCAKVGKSQKVAVHLIDRKFKGKQVITAERVRTLERAKSFKTCNPSFVVVMGASYVEHRFTLTIPSMFGMRHFDLEKKKGDIYFQVLTSGRVWPARYVIKMRRTTLKFELTGGWKAFAKDNNLKVGDACNFELISNTSLTFTVHIFREADNDNTNCSTSQSKICV 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g01199 390 SUPERFAMILY DNA-binding pseudobarrel domain 82 178 IPR015300 -
Mepo3g01199 390 Gene3D - 249 376 IPR015300 -
Mepo3g01199 390 SMART B3_2 272 374 IPR003340 GO:0003677
Mepo3g01199 390 SMART B3_2 86 178 IPR003340 GO:0003677
Mepo3g01199 390 Gene3D - 78 179 IPR015300 -
Mepo3g01199 390 ProSiteProfiles B3 DNA-binding domain profile. 85 178 IPR003340 GO:0003677
Mepo3g01199 390 ProSiteProfiles B3 DNA-binding domain profile. 272 374 IPR003340 GO:0003677
Mepo3g01199 390 CDD B3_DNA 270 372 IPR003340 GO:0003677
Mepo3g01199 390 Pfam B3 DNA binding domain 272 373 IPR003340 GO:0003677
Mepo3g01199 390 Pfam B3 DNA binding domain 86 177 IPR003340 GO:0003677
Mepo3g01199 390 CDD B3_DNA 84 175 IPR003340 GO:0003677
Mepo3g01199 390 SUPERFAMILY DNA-binding pseudobarrel domain 268 374 IPR015300 -
Mepo3g01199 390 PANTHER B3 DOMAIN-CONTAINING 79 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g01199 Mepo-Chr3 18210806 18214868 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g01199 86 375 B3 DNA Binding Superfamily AT3G18990 28.070 1.29e-34 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mepo3g01199 B3 1.8e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g01199 - - mtr:11434552 457.603