Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g01198 ATGAACAATTTCCAGATGATGCCAAGAAAGTTTGTAGAGAAATATGGAGAAGGTTTACCAAAAGCTATATATCTAAAGACTCCAAATGGTGCAAAGTGGAAATTAAATTTGGTAAAAAGTAATGGCAAAATATGGTTTGAAAAGGGTTGGAAAGAATTTGCAGAGCATCACTCACTAGCTCATGGCCATCTTCTGCTTTTCAAATATCAAAGAATTTCTCATTTTCGTGTGCACATTTTTAAAAAGAGTGCCTTAGAGATAAATTACCCTTTCCAAAGGGCTGCAGCAGCTAAAGCTAATAGGGTCTCCAATGGTCAAGGAAATAAACCTCCAAATGGTGAAAATTGTAGAGCATCTCAAAAGAGAAAAGATAACTCCTTTGAACTTCATCATTCACATGAAATTGGAAGCAGTAGTTGTTTTACTGTTGGAAAACTGCAAAAGGTAGCATCTTTGCATCATACTGACGGAGAGTCCAAAGGGAAAGAAGTGATTACTGCTAAGAGAGTTACAACTTTTGAAAGAGCACAATCTTTCAAAACATGTAATCCATCCTTTGTTGTTGTCATGCGTGCATCATACGTGGAACGTCATTTTCTACTGAATATACCACGTATGTTTGGTAATAGACACTTTGATTTGGATAAGAGGAGAGGAGATATTTATTTTCAGGTGTTAAATAAAGGAGTTTGGCCTGCAAAGTACTCTATCAGGAAGACCCGCAACGGACTACAATTTGAAATCACAGGTGGATGGAAGGCATTTGCAGAGGACAATAACTTGAAAGTTGGTGATGTTTGCAAATTTGAGCTCATCTCTAGCACTGTACTGACCTTCATTGTTCACATCTTTAGGGAGACAGACAATGACAACACAAAGTGTTCAACTTCTCAAAGTAGAATCAATTGA 909 0.3707 MNNFQMMPRKFVEKYGEGLPKAIYLKTPNGAKWKLNLVKSNGKIWFEKGWKEFAEHHSLAHGHLLLFKYQRISHFRVHIFKKSALEINYPFQRAAAAKANRVSNGQGNKPPNGENCRASQKRKDNSFELHHSHEIGSSSCFTVGKLQKVASLHHTDGESKGKEVITAKRVTTFERAQSFKTCNPSFVVVMRASYVERHFLLNIPRMFGNRHFDLDKRRGDIYFQVLNKGVWPAKYSIRKTRNGLQFEITGGWKAFAEDNNLKVGDVCKFELISSTVLTFIVHIFRETDNDNTKCSTSQSRIN 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g01198 302 MobiDBLite consensus disorder prediction 100 123 - -
Mepo3g01198 302 CDD B3_DNA 6 81 IPR003340 GO:0003677
Mepo3g01198 302 SMART B3_2 3 83 IPR003340 GO:0003677
Mepo3g01198 302 SMART B3_2 186 287 IPR003340 GO:0003677
Mepo3g01198 302 ProSiteProfiles B3 DNA-binding domain profile. 186 287 IPR003340 GO:0003677
Mepo3g01198 302 MobiDBLite consensus disorder prediction 100 115 - -
Mepo3g01198 302 SUPERFAMILY DNA-binding pseudobarrel domain 4 90 IPR015300 -
Mepo3g01198 302 Gene3D - 1 84 IPR015300 -
Mepo3g01198 302 PANTHER B3 DOMAIN-CONTAINING 6 275 - -
Mepo3g01198 302 CDD B3_DNA 184 285 IPR003340 GO:0003677
Mepo3g01198 302 Pfam B3 DNA binding domain 5 82 IPR003340 GO:0003677
Mepo3g01198 302 Pfam B3 DNA binding domain 186 286 IPR003340 GO:0003677
Mepo3g01198 302 Gene3D - 164 289 IPR015300 -
Mepo3g01198 302 ProSiteProfiles B3 DNA-binding domain profile. 1 83 IPR003340 GO:0003677
Mepo3g01198 302 SUPERFAMILY DNA-binding pseudobarrel domain 182 288 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g01198 Mepo-Chr3 18196467 18198146 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g01198 1 91 B3 DNA Binding Superfamily AT3G18960 46.739 6.71e-21 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mepo3g01198 B3 1.5e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g01198 - - mtr:11434552 417.927