Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g01197 ATGGCTAGTGATACTCCTGAGGTGAAGCCAATCCACTTTTTCAAGATAATACTTGCTCAAAATCTCCATGAAGGAAAGCTTATGATACCAAGAAAGTTTGTGGAGAAATATGGAGAAGGTTTATCAAATGCTATATATCTAAAGACTCCAAATGGTGCAAAATGGAAATTAAATTTGGTAAATAGTGATGGCAAAATATGGTTTGAAAAGGGTTGGAAAGAATTTGCAGAGCATCACTCTCTAGCTCATGGCCATCTTCTGCTTTTCAGATATGAAAAAACTTCTCTTTTTGAGGTTTCAATATATAGAAACATGGAAGATGATCATGAAATATCAGCTTTCTTGTGTTATAATTTTGCAGGGAAACAAGTGATTACTACTAAGAAAGTTCCAACTCTTGAAAGAGCACAATCTTTCAAAACAAGTAATCCATCATTTATTGTTGCCATGCGTGCATCATACGTTGAACACCGTTTTCGTCTGAATATACCATGTATGTTTGGTAATAGACACTTTGAGTTGGATAAGAAGAGAGGAGATGTTTATTTGGTGTTAACTGAAGGAGTTTGGCCTGCAAAGTACCTAATCAGGATGACCCTTACAGGACCACATTTTGATTTCACAGTTGGATGGAAGGCATTTGCAGAGGACAATAACTTGAAAGTTGGTGATGTTTGCAAATTTGAGCTCATCTCTAGCACTATACTTATGTTCATTGTTCACATCTCAAAGAATACTGCTAAAGAAGGGAAACACTACTAG 762 0.3596 MASDTPEVKPIHFFKIILAQNLHEGKLMIPRKFVEKYGEGLSNAIYLKTPNGAKWKLNLVNSDGKIWFEKGWKEFAEHHSLAHGHLLLFRYEKTSLFEVSIYRNMEDDHEISAFLCYNFAGKQVITTKKVPTLERAQSFKTSNPSFIVAMRASYVEHRFRLNIPCMFGNRHFELDKKRGDVYLVLTEGVWPAKYLIRMTLTGPHFDFTVGWKAFAEDNNLKVGDVCKFELISSTILMFIVHISKNTAKEGKHY 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g01197 253 Gene3D - 124 247 IPR015300 -
Mepo3g01197 253 SMART B3_2 13 105 IPR003340 GO:0003677
Mepo3g01197 253 SMART B3_2 146 245 IPR003340 GO:0003677
Mepo3g01197 253 CDD B3_DNA 144 244 IPR003340 GO:0003677
Mepo3g01197 253 SUPERFAMILY DNA-binding pseudobarrel domain 8 103 IPR015300 -
Mepo3g01197 253 CDD B3_DNA 12 103 IPR003340 GO:0003677
Mepo3g01197 253 Gene3D - 6 105 IPR015300 -
Mepo3g01197 253 ProSiteProfiles B3 DNA-binding domain profile. 146 244 IPR003340 GO:0003677
Mepo3g01197 253 SUPERFAMILY DNA-binding pseudobarrel domain 141 244 IPR015300 -
Mepo3g01197 253 Pfam B3 DNA binding domain 14 103 IPR003340 GO:0003677
Mepo3g01197 253 Pfam B3 DNA binding domain 146 243 IPR003340 GO:0003677
Mepo3g01197 253 PANTHER B3 DOMAIN-CONTAINING 3 234 - -
Mepo3g01197 253 ProSiteProfiles B3 DNA-binding domain profile. 12 105 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g01197 Mepo-Chr3 18191522 18193411 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g01197 106 240 B3 DNA Binding Superfamily AT3G18990 28.676 6.67e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mepo3g01197 B3 8.4e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g01197 - - mtr:120577159 307.375