Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g01195 ATGGCTAGTGAAACTCCTGAGGTGAAGCCAATCCTCTTTTTCAAGATAATACTTGCTCAAAATCTTCATGAAGGAAAACTTATGATGCCAAGAAAGTTTGTGGAGAAATATGGAGAAGGTTTATCAAATGCTATATATCTAAGGACTCCAAATGGTGCAAAATGGAAATTAAATTTGGTAAATAGTGATGGCAAAATATGGTTTGAAAAGGGTTGGAAAGAATTTGCAGAGCATCACTCTCTAGCTCATGGCCATCTTCTGCTTTTCAAATATCTAAGAAATTCTCGTTTTCTTGTGCGCATCTTTGAAAAGAGTGCCTTAGAGATAAATTATCCTTTCCAAAGAGTTGCAGCCAAAAAGGTCTCCAATGGTCAAAAGAGAAAAGCTAACTCCTCTTTTGAATTCCATCAACCATATGAAATTGGAAGCAATAGTTGTGTTGAAGTTGAGAAATTGAATAAGGTAGCAACTTTGCATCATGCTGGCAGAGAGTCCAAAGGGAAACAAGTGCTTACTGCTAAGAGAGTAACAGCTCTTGAAAGAGCACAATCTTTCAAAACATGTAATCCATCCTTTGTTGTTGTCATGCGTGCATCATACGTGGAACACCGATTTCTCATGAATATACCACGTAAGTTTGGTAATAGACACTTTGATTTGGATAAGAAGAGAGGAGATATTTATTTGGTGTTAAATAAAGGAGTTTGGCCTGCAAAGTACCTAATCAGGATGACCCTTAAAGGACCACATTTTGATCTCACAACTGGATGGAAAGCATTTGCAAAGGACAATGACTTGAAAGTTGGCGATGTTTGCAAATTTGAGCTCATCTCTAGCACTATACTTACCTTCATTGTGCACATCTTTAGAGAGACTGGCAATGACAACACAAATTGTTCAACATCTCAAAAATTTTCCCAAGTGAAAGAAGAAGCTTCTCAAGGATAA 948 0.3713 MASETPEVKPILFFKIILAQNLHEGKLMMPRKFVEKYGEGLSNAIYLRTPNGAKWKLNLVNSDGKIWFEKGWKEFAEHHSLAHGHLLLFKYLRNSRFLVRIFEKSALEINYPFQRVAAKKVSNGQKRKANSSFEFHQPYEIGSNSCVEVEKLNKVATLHHAGRESKGKQVLTAKRVTALERAQSFKTCNPSFVVVMRASYVEHRFLMNIPRKFGNRHFDLDKKRGDIYLVLNKGVWPAKYLIRMTLKGPHFDLTTGWKAFAKDNDLKVGDVCKFELISSTILTFIVHIFRETGNDNTNCSTSQKFSQVKEEASQG 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g01195 315 CDD B3_DNA 190 290 IPR003340 GO:0003677
Mepo3g01195 315 SMART B3_2 192 292 IPR003340 GO:0003677
Mepo3g01195 315 SMART B3_2 13 105 IPR003340 GO:0003677
Mepo3g01195 315 Gene3D - 7 106 IPR015300 -
Mepo3g01195 315 SUPERFAMILY DNA-binding pseudobarrel domain 11 112 IPR015300 -
Mepo3g01195 315 ProSiteProfiles B3 DNA-binding domain profile. 12 105 IPR003340 GO:0003677
Mepo3g01195 315 CDD B3_DNA 12 102 IPR003340 GO:0003677
Mepo3g01195 315 Pfam B3 DNA binding domain 14 104 IPR003340 GO:0003677
Mepo3g01195 315 Pfam B3 DNA binding domain 192 291 IPR003340 GO:0003677
Mepo3g01195 315 ProSiteProfiles B3 DNA-binding domain profile. 192 292 IPR003340 GO:0003677
Mepo3g01195 315 SUPERFAMILY DNA-binding pseudobarrel domain 188 291 IPR015300 -
Mepo3g01195 315 PANTHER B3 DOMAIN-CONTAINING 4 286 - -
Mepo3g01195 315 Gene3D - 170 293 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g01195 Mepo-Chr3 18176021 18179071 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g01195 12 290 B3 DNA Binding Superfamily AT3G18990 26.087 1.05e-25 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mepo3g01195 B3 2.8e-17 CL0405