Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g01193 ATGGAAGGAGCATTACTGCCACCAGGTTTTCGTTTCCATCCAACTGATGAAGAACTAGTTGGATACTATCTTAAAAGAAAAGTGGAAGGACTTGAAATTGAGCTTGACGTTATTCCAGCGATTGATTTATACAAATTTGATCCATGGGAGTTTCCTGAGAAATCATTTCTATCGAAACGAGATTTAGAATGGTTTTTCTATTGTACGCGTGATCTAAAGTACCCTAATGGATCAAGAACAAATAGAGCTACCAAACCTGGCTACTGGAAAGCCACTGGAAAAGAGAGAGATTGTGTGCCAGTGTAG 306 0.3922 MEGALLPPGFRFHPTDEELVGYYLKRKVEGLEIELDVIPAIDLYKFDPWEFPEKSFLSKRDLEWFFYCTRDLKYPNGSRTNRATKPGYWKATGKERDCVPV 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g01193 101 Gene3D NAC domain 15 100 IPR036093 GO:0003677|GO:0006355
Mepo3g01193 101 SUPERFAMILY NAC domain 4 97 IPR036093 GO:0003677|GO:0006355
Mepo3g01193 101 Pfam No apical meristem (NAM) protein 7 97 IPR003441 GO:0003677|GO:0006355
Mepo3g01193 101 ProSiteProfiles NAC domain profile. 6 101 IPR003441 GO:0003677|GO:0006355
Mepo3g01193 101 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g01193 Mepo-Chr3 18165923 18166439 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g01193 1 96 NAC Transcription Factor Family AT4G17980 80.208 6.26e-54 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mepo3g01193 NAM 1.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g01193 - - mtr:11415472 197.593