Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g01171 ATGGTTCCTTCCCCTATCAGCCCATTCCCTTTGATCCCAACCCATCGGTACAAGGCTACTCACACCAATGGGTCTCAAAGAGAATTTATCAGTGCTCGAAATCCAATGGTCTTTTCACCAAACCATAATAAGCTGGAAGACATACATGGTCGCCTTAACACTAGCAAAGGAATTTGGGATTTGTCTACAAAAAATATCTTTCAATATGGGGAAACTTCACAGGTAAGTCCCTCTCTATCACCATCACTAGCTTATGATGCACATCAATTTGTGTCAGTTAATCCTGAGCTTCAAGGAGATCTTTCATGCAATGATGGAATTGGAAACAAATCCCAAGAAAATGATCAACGATTCGTGTTGAGTGACCAAAAGCGGCGGAAGAGGATTCAAAATAATAATGAAATTCAACACAAGGATCCCAATCAAATCAAGGGACAATGGACTTCAAATGAGGATCGGGTTCTTGTCCAATTGGTGGATCGCTTTGGGCTTAGAAAATGGTCTCGTATTGCCGAGTTTCTGGAAGGCAGAATTGGAAAACAGTGCAGAGAGAGATGGAATAACCATCTTCGACCAGACATTAAGAAGGATTCATGGACCGAAGAGGAGGACAAAATACTAATCGAAGCTCACAAAATAGTTGGAAACAAGTGGACTGAAATTTCAAGGAGATTACCGGGACGCACTGAGAACTCCATCAAGAACCATTGGAACGCCACTAAGCGCCGCCAAAATGCCAAAGGGAAGAACAGAGGTAAGAGTTCAAAGGGAATACTACTTCTGAAATACATAATGGAAGTCACCAATGTTAAGGAAGTTGAAAAGGAGCCGATGATGTATTCTACGAGCATGATGGATATTAGAAATCAACCGAATTTTGAAAGCTCAGAGAGTGATTTTAGAACTGACGGTTTGGCTACTCCAGAGAACGAAATTTGTGGGTATGCTCCAATGATGATCAATGGTGATGATGGAATGGCAAGTGGATCTGGTAGCACAATGAATTATGAGTTTGGATCGTATGGAATGAAGTTTTTTCCTGAGGTTCCTTTTAAGGAAGAAATTGATCTCATGGAGATGATCTATAAAAACCCTTAA 1098 0.4089 MVPSPISPFPLIPTHRYKATHTNGSQREFISARNPMVFSPNHNKLEDIHGRLNTSKGIWDLSTKNIFQYGETSQVSPSLSPSLAYDAHQFVSVNPELQGDLSCNDGIGNKSQENDQRFVLSDQKRRKRIQNNNEIQHKDPNQIKGQWTSNEDRVLVQLVDRFGLRKWSRIAEFLEGRIGKQCRERWNNHLRPDIKKDSWTEEEDKILIEAHKIVGNKWTEISRRLPGRTENSIKNHWNATKRRQNAKGKNRGKSSKGILLLKYIMEVTNVKEVEKEPMMYSTSMMDIRNQPNFESSESDFRTDGLATPENEICGYAPMMINGDDGMASGSGSTMNYEFGSYGMKFFPEVPFKEEIDLMEMIYKNP 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g01171 365 CDD SANT 198 241 IPR001005 -
Mepo3g01171 365 Gene3D - 197 258 - -
Mepo3g01171 365 Pfam Myb-like DNA-binding domain 144 190 IPR001005 -
Mepo3g01171 365 Pfam Myb-like DNA-binding domain 196 238 IPR001005 -
Mepo3g01171 365 SMART sant 195 243 IPR001005 -
Mepo3g01171 365 SMART sant 143 192 IPR001005 -
Mepo3g01171 365 SUPERFAMILY Homeodomain-like 141 237 IPR009057 -
Mepo3g01171 365 CDD SANT 147 190 IPR001005 -
Mepo3g01171 365 ProSiteProfiles Myb-like domain profile. 139 190 IPR001005 -
Mepo3g01171 365 ProSiteProfiles Myb-like domain profile. 191 241 IPR001005 -
Mepo3g01171 365 FunFam Transcriptional activator Myb isoform A 143 196 - -
Mepo3g01171 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 195 245 IPR017930 -
Mepo3g01171 365 Gene3D - 143 195 - -
Mepo3g01171 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 139 194 IPR017930 -
Mepo3g01171 365 PANTHER MYB PROTEIN-RELATED 126 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g01171 Mepo-Chr3 17926260 17928982 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g01171 143 264 MYB Transcription Factor Family AT4G18770 71.311 5.08e-59 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mepo3g01171 Myb_DNA-binding 1.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g01171 K09422 - psat:127129356 452.21