Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g01158 ATGGCTGGTGTTTCTAACAGAACTCGTAGCAAGAATGTTCCATTGTTTCGTAGTCTTTCTCCTGATGTGTCATTTTATTCGAAACCAAAGTGGCGAAAGAATGATGAAGATGATAAGGGTTTGGACAATGTTTCTGGTTTTTCTAGCAAAACTTGTAGCAAGAGTGTTCCGTTATTTGGTGTTTCTAGCAGAACTCGTAGTAAAAGTGTGCCATTGTTTGGTTGTCTTTCTGTCGATGGTTCATCGAAACGGAGAAAGAGTGATGAAGGTGAAAAGGGTTTGGACTTTGCTTCTGGTTTTAAGAAAATGAAGGTAAAAGAAGAACCTTTTGTTGTTCCTGACAATGCTAAGGTTATTATTTCCATTGATGATGATGATGATGATGATGTGAAGATGGTTGAGAAAAAATGTGGTTTGGAAGAAGATAACCCGATTTCAATATGTTCTGATGAGTATGGTGAGAGTGATGAAGAAGATTCTGTTGGTTTTGGTGGTGATAATGAAGAAGAAGAAAAGGAAGAAAAAGGTGATGATGATGTTAAAGAGGAAGTAAAAAAGGATGAAAGTAAAGGTAGTGGAGGAAATGGTGATATTGATGTCAAAGATGAAAACTTTGTTGATGAAAAGTGTGGCTTGGCACATGAAAACGTGATTATAATAGATACAGATGAAAATGGTGAAAGTGATGAAGAAGAAGAACACTCTGTTGGTTCTGATTCTGATAATGCTGATGATGATGATGTTAACGAGGGAGTAAAAAGCGATGAAAGTGGACGAATTGACGAGTTTGCTGATGAAGATTCTGATGAGAGTGAGGATGATGATTCTAGTGATGATTTTAAAGTTGAGGAGCTGAATGAGATTTCTGACAATGATGATGACAGTTCTTCTGACTCTCCTTATGTTCATGAGAAGGAGGAGAAGAAAAAGGGTTATAGAGAAGATTTGAATGTGGTGGAGAAGTTGGTTAGAGAGGTGATGGATAGACAATGTGGAATTTCTGAGAATAGTTCATCTTCCACAAGTACTGATCATGCTAGTGTTTCCTCTAGTATCTATGTGAAAAAGGGTTCTTCTTCTAAACTGGATGGAGTATCAGAGACACTGAAAGCAAAGAGTGTTGATGTGAAAATGAAAAACGTCTCTGACGAAAGTGTGAATGTTGGAGTGAATGCCAAATCCAAAGACAATGTTGGTGATTCTGATCAAGGAAAAGATCAATATGTTGGAGGAGTTTCTTCGGTTCAAACAAAGCAAGAGAATGAAGTGCTATGGGATGAATTGGATACATCCCTTAGAGAAGAAGATTCTGTATCAAAGAATGAAACATCAGAGGGAAAAAAAGCAAAAAGTGTAAATGTTGCCATAGCCAAATTCAAATCCAAAGTCAAAGACAATGCCAAACCTAATAACAGTGTGAATGTTGCTGACTATGATAAAGGAAAAGAAAATTATGTCAAAGGTTTAGATGTTGGAGGAGTTTCATTGGTTCAAACGAAAGAATCAGATAAAGAGAAAATGATGGTGAACAAAGGAAGGGACTATAAAGGTATAGCTAACATCCCTATTGTGAAGAAGAAGGAATCTATTTATAACAATGGGTTGAATCAAAGCGTCAAAAGTACACTTTTTATGCCGAAGGAGTTGGGTTTACTTGAACTGCTTGGTAAATGCCTCTGGGACGACAAGAATACCGTTAAGGATGATTCAATTGTGTTGGAGATGAAGGATATTGGCGTTGATCAGCAAGATATGCAGAAATCACCGACTTGTGTTAAGACACCTCATGAACGGATATGGAGCCTTAAAAAGGTGGAAAAAGTGCTAAAAACCAAGGAGGAGGAAGAACAGGAACCGTTATGGGATGAATTGGATACATCCCTTAGAGAAGAAGATGCTGTATCAAAGATTGGAAATTTAAGGACAAATGAAGCTACACAAGAAACAAACGGAAATCCATCATCTCGTTGTGAACATGACACTTTTCTCGACGAACAGATTGGTATATATTGCAAATTTTGTGGTGTGGTTATTACTGAGATCAAAGATATCTCACAACTAGTGTATGAAAGAGTTTTGAATGAACGATCCGGAAGAAGAGATTCATTAGATGATTCGGTCAATTCTTCACTCTTTGATGGCTCTCAGTTCAATGTTTCTGATAATGGTTCGGAGACTAATTTCTCTTGCAATGAAGGCACAGTTTGGGACCTAATTCCTGGTGTGAAACAAAAATTATATCCTCATCAACAAGAAGGCTTTGAATTCATTTGGAAAAACTTGGCAGGGAATACCAATCTTCGGAAGTTAAAGAAAGCTGTTCCTTGCAGGGAGGGTGGCTGCATTATCTCCCATGCTCCTGGAACCGGAAAGACAAGGCTGGCTGTAGTATTTCTCATGGCTTATTTGAAAGTGTTCCCGAAATGCTTGCCGGTTATTGTTGCTCCTGCGAGTTTGTTACATACTTGGGAAGAAGAATTCAAAAAATGGGACATTCCATTTCACAATTTGAACAATCTTGAGTTATCTGGTAAAGTGCATGATGATGTTGTTAATTTGCTTAATTGGTCTAATTCACAGCATAGTATGGATACAATGCGGATGGTGAAACTGATTTCGTGGTACAAAGAAAAGAGCATTCTTGGAATAAGTTACAGTTTGTACGAGAAGCTAACCAGAGGAGGAGGGGAATCTGACGGTGAGAGAGGGGAAGATGAGAAAAAGAAAAAACAATCAAGTGTGGAGAAAAGAAAAGAAATTATGGGAAATGTTCTACGTAAAATTCCTGGTTTGTTGGTGCTTGACGAAGGACATACGCCAAGAAACAAAAAAAGTGGTATTTGGCAAGTTTTGTCGGAAGTTCAAGCACGAAAGCGAATCATCCTTTCTGGAACTCCTTTCCAGAACAACTTCATGGAACTATACAACACTTTGAGCTTAGTGAAGCCTTCTTTTCCTAACACGATGCCACACGAGCTGAAAAAGTTTTGCCAGAAGAAGGACCATAAAAAAGCATCTAAAGAATGGATTTGGGAACCGGTTCCTGAGGAAAAGATCAAGCAATTAAAATTGCTTATGGATCCCTTTGTTCATGTTCACAAAGGCGCGATCCTTCAAAGGATGCTTCCCGGGTTAAGAAAATGTGTGTTGCGTTTGATGCCGGACAGCTTTCACAAGAAAATTCTTGAGGGGATTCAAAGTTCAAAGAATACACTGAGCTTTGATTTTAAGGAGACATGGGCATCAGTCCATCCGTCTCTTCTGCTCGAATGCGACCTTTTGGAAGAAGAGGAGTCTGTTCTCGACAAGGACCGGCTAGAAAAGCTTAGATTGAACCCCAATGCAGGCGTCAAAACAAAGTTTTTGGTGGAGTTTGTTAGACTTTGTGCTGCTTTAAATGAGAAAGTTCTTGTGTTCAGCCAATACCTCAGTCCTTTACGCTTAATTATAGAGCAGTTATTAAATGAGCAGTTATTAAAATGGACGATGGAGAAGGAAATCCTCTTCATTTCTGGAGAGGTAAAGGACAGGAAGTCCTTAATCGATACCTTCAATGATGAAAACAGTCAAGCGAAGATTCTCCTTGCAACAACAAAAACTTGTTCCGAGGGAATCAGCTTGGTTGGAGCTTCAAGGGTTGTACTACTCGATGTCGTATGGAATCCCTCTGTTGAAAAACAGGCTATTAGTAGAGCTTATAGAATTGGGCAGAAGAAAGTTGTCTACACATACCATCTACTCACTGAAGGGACTAGAGAGTGCGATAAATTTCGCAAACAGGCCAAAAAGGACCGGTTATCTAAACTAGTTTTTTCGGCTAAAAATGATGATAATAACGAGGAGTTGAGGAGCTGTGCAGCGAACATTGAAGATAGAATTCTTGATAAGATGATTCGGCATGAAAAGCTCCAAGACATGTTTGTTGAGTGTTTGGTACAACCGAAGGAGCGAGAATATTGA 3960 0.3879 MAGVSNRTRSKNVPLFRSLSPDVSFYSKPKWRKNDEDDKGLDNVSGFSSKTCSKSVPLFGVSSRTRSKSVPLFGCLSVDGSSKRRKSDEGEKGLDFASGFKKMKVKEEPFVVPDNAKVIISIDDDDDDDVKMVEKKCGLEEDNPISICSDEYGESDEEDSVGFGGDNEEEEKEEKGDDDVKEEVKKDESKGSGGNGDIDVKDENFVDEKCGLAHENVIIIDTDENGESDEEEEHSVGSDSDNADDDDVNEGVKSDESGRIDEFADEDSDESEDDDSSDDFKVEELNEISDNDDDSSSDSPYVHEKEEKKKGYREDLNVVEKLVREVMDRQCGISENSSSSTSTDHASVSSSIYVKKGSSSKLDGVSETLKAKSVDVKMKNVSDESVNVGVNAKSKDNVGDSDQGKDQYVGGVSSVQTKQENEVLWDELDTSLREEDSVSKNETSEGKKAKSVNVAIAKFKSKVKDNAKPNNSVNVADYDKGKENYVKGLDVGGVSLVQTKESDKEKMMVNKGRDYKGIANIPIVKKKESIYNNGLNQSVKSTLFMPKELGLLELLGKCLWDDKNTVKDDSIVLEMKDIGVDQQDMQKSPTCVKTPHERIWSLKKVEKVLKTKEEEEQEPLWDELDTSLREEDAVSKIGNLRTNEATQETNGNPSSRCEHDTFLDEQIGIYCKFCGVVITEIKDISQLVYERVLNERSGRRDSLDDSVNSSLFDGSQFNVSDNGSETNFSCNEGTVWDLIPGVKQKLYPHQQEGFEFIWKNLAGNTNLRKLKKAVPCREGGCIISHAPGTGKTRLAVVFLMAYLKVFPKCLPVIVAPASLLHTWEEEFKKWDIPFHNLNNLELSGKVHDDVVNLLNWSNSQHSMDTMRMVKLISWYKEKSILGISYSLYEKLTRGGGESDGERGEDEKKKKQSSVEKRKEIMGNVLRKIPGLLVLDEGHTPRNKKSGIWQVLSEVQARKRIILSGTPFQNNFMELYNTLSLVKPSFPNTMPHELKKFCQKKDHKKASKEWIWEPVPEEKIKQLKLLMDPFVHVHKGAILQRMLPGLRKCVLRLMPDSFHKKILEGIQSSKNTLSFDFKETWASVHPSLLLECDLLEEEESVLDKDRLEKLRLNPNAGVKTKFLVEFVRLCAALNEKVLVFSQYLSPLRLIIEQLLNEQLLKWTMEKEILFISGEVKDRKSLIDTFNDENSQAKILLATTKTCSEGISLVGASRVVLLDVVWNPSVEKQAISRAYRIGQKKVVYTYHLLTEGTRECDKFRKQAKKDRLSKLVFSAKNDDNNEELRSCAANIEDRILDKMIRHEKLQDMFVECLVQPKEREY 1319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g01158 1319 SMART ultradead3 742 992 IPR014001 -
Mepo3g01158 1319 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 772 984 IPR014001 -
Mepo3g01158 1319 Coils Coil 302 322 - -
Mepo3g01158 1319 Gene3D - 722 1030 IPR038718 -
Mepo3g01158 1319 MobiDBLite consensus disorder prediction 261 294 - -
Mepo3g01158 1319 MobiDBLite consensus disorder prediction 387 413 - -
Mepo3g01158 1319 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 736 1029 IPR027417 -
Mepo3g01158 1319 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1124 1283 IPR001650 -
Mepo3g01158 1319 MobiDBLite consensus disorder prediction 222 251 - -
Mepo3g01158 1319 MobiDBLite consensus disorder prediction 894 916 - -
Mepo3g01158 1319 Gene3D - 1094 1312 IPR027417 -
Mepo3g01158 1319 Pfam Helicase conserved C-terminal domain 1130 1236 IPR001650 -
Mepo3g01158 1319 SMART helicmild6 1157 1236 IPR001650 -
Mepo3g01158 1319 MobiDBLite consensus disorder prediction 296 317 - -
Mepo3g01158 1319 MobiDBLite consensus disorder prediction 331 366 - -
Mepo3g01158 1319 MobiDBLite consensus disorder prediction 178 210 - -
Mepo3g01158 1319 CDD SF2_C_SNF 1118 1247 - -
Mepo3g01158 1319 Pfam SNF2-related domain 756 1064 IPR000330 GO:0005524|GO:0140658
Mepo3g01158 1319 MobiDBLite consensus disorder prediction 143 317 - -
Mepo3g01158 1319 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 439 1317 IPR044567 GO:0080188
Mepo3g01158 1319 MobiDBLite consensus disorder prediction 330 366 - -
Mepo3g01158 1319 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 930 1276 IPR027417 -
Mepo3g01158 1319 MobiDBLite consensus disorder prediction 151 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g01158 Mepo-Chr3 17703538 17708655 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g01158 1134 1284 RAD5 or RAD16-like Gene Family AT5G43530 37.255 4.68e-14 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mepo3g01158 SNF2_N 4.3e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g01158 K10875 - gmx:100812737 806.208