Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g01152 ATGACTAGTGTTTCTAGCAGAACTCGTAGCAAAAATGTTCCATTGTTCCGTTGTCTTCCGAAAAAATCGAAGCGGCTAAGAAAGAGTTATGAAGATGATATGGGTTTGGATCACTATGTTTCTCGTTGTAAGAAAATGAAGGTAAAAAGAGAAACTTTTGTTCTTCCTAAGAATGTTAAGGTTATTTCCATTGATGATGATGTGGAGATGTTTGATGCTAAAGATGGAAGCTTTGTTGAGAAAAAATGTGGTTTGGATGAAGATAATCCGATTTCAATAGGTTCAGATGAGTATGATGAGAGTGATGAAGAACATTCTGTTGGTTTTGGCGGTGATAATGAAGAAGAAGAGGAAGAAGAAGAAGAAAAAGAAGGTGTTGATGTTAAAGAGGAAGTAAAGAATGATGAAAGTAAAGGAAGTGGCGAGTTTGATGATAAAGTTAAAAACTTTGTTGATTTGGATGATTCTGCAGAGAGTGGTGATGATTCTGATTCTGTTTCTGATGAGAGTGAGGATGATGATTCGGACGATGGAGATTTTGATGTTGATAAGGTGAATGACATTGATGATGATAGTTCTTCTGGCTCTCCTTACGATGATGACGAGGAGGAGGAGGAGGAGGAGGTGGTGGAGGAGGACGAGGACGAGGACGAGGAGAAGGAGAAGAAAAAGGGTGGGAGAAAATACTTGAATGTGGTGGAGGATTTGGTTAGAGAGGTGATGGATAGACAAAGTGGAATCTCTGAGATGAATAATGAGGAGATAAACGTTGAAAATAGTCCATCTTCCACAAAGAATGAGGAGATGAAGGATAATAGTCCTTCTGTGAACAATGGTGAAATGGAGCATTCAGGTTATGGTGAGGAGATGAAGGATAAAAATCCTTCTGTAAACAATGAAGTGGAGCATTCTGATTATGCTAGTGTTGCAACCTCTAATAGCTTTGAGAAGATGAATGGTTCTTTTGTACACAATGATGAAGTGGAGCATTCAGATCCAATAAAGGCTTCTTCTTCTTCTTCAAACCTGAAGGAAACATCTGAGATACAAAAGGAAAAATGTATGCAAAATGTCTCTGATGATGATTTAAATGTTACCAAAGAAAGTGTGAATCTTTGTGGTGATATTGATATTGCAAAAATCAAAGTCAAAGTCGAAGACAATGCAGACACTAATGAATGTGTGAAGGTTGTAGATTCTCATGAAGGTAAGGGAAAATATGGCAAAGGTTTAGATGTTGGAGGAGTTTCTTTGGTTCAAACAAAGGAAGAAGAGATGAAGAATGAACCAGTTGTGTTTGAGTTCAAGTATGATGCCGTTGATCGACGAGATAGGCAGCCACTACCAGTTCCCGTGGAGACACCCCCATCGATATGGAGCTTTAAAAAGGTGGGAAAAGTGCAAAAGACTAAGGAGGATGAGGAGGAGGAAGTGTTATGGGATGAAATGGAGACTGCTCTTAGAGAATCAAAAGCTGTATCCAAGAATGAAGCATCAGAGGGAAAAAAAGCAAAAAGTGTAAATTTTACCAAAGCCAAATTCAAATCCAATGTCAAATACAATGCCAAACCTAATGACAGTGTGAATGTTGCTGACTGCGATAAGGGAAAGAAAAAATATGTCGAAGGTTTAGGTGTTGGAGGAGTTTCATCGGTTCAAACGAAGCAAGAAAAGATGAAGGAATCAGAGAAAGAGAAAATAATGGAGAACAAAGAAAGGGACAATACAGGTATAGCTAACATCCCTATTGAGAAGAAGGAATCGGATAAAGAGAAAATGATGGAGAACAAAGAAAGGGACTATACCGGTATAGCTAGAATTCCTATTGACAAGAAGAAGGAATCTATTGATAACCATGGTTTCAATCAAAGCGTCAAAAGCCCGCATTTTATGCCAAAGGAGTTGCGTTCACTCGAACTCCTTGCTCAATGCTATTGGGAAAGAAAGAATACCATGAACAAAGATTCAATTGTGTTGGAGGTCAATGAAGATTGCGTTGATTGGCAAGATACACGGCCACCACCGGTTCCTGTGGTAGAGACACCCCAATCGTTATGGAGCCTTAAAAAGGTGGAAAAAGTACAAAAGACCAAGGAGGATGAGGAGAATGAAGTGTTGTGGGATGAACTGGATACAGCGCTAAGAGAATCTGATGCTGTATCCATGATTGGAAATTTAGAGACAAATGAAGCTAGCAGAAGTCCATCATGTTGTTGTGAACACAACATTTTTCTCGATGAAGAGATCGGTGAATTTTGCAAATCATGTGGCGTGGTTATTACTGAGATCAAATATATCTCACCACTAGTGATGGATAGATTTCCCGGTGAAGGTTCAGGAAAAAAAGCATCATTTGATGGAGTAAATGTTTCACATGTTGATGGATCTCAGTTAAATGTTTCTGATAATGATTCGGAGACTAATTTCTCTCGCAATGAAGGCACAGTTTGGGACCTAATTCCTGGTGTGAAACAAAAATTATATCCTCATCAAATAGAAGGCTTTGAATTCATTTGGAAAAACTTGGCAGGACACACTGAGCTTCAAAAGTTAAAGAATGCCGATCCTTGCAGCGAAGGTGGCTGTATTATTTCTCATGCACCTGGAACCGGAAAGACAAGGCTGACCATAGTGTTTCTCAAGGCATATTTGAAAGCCTTTCCCAAATGCTTGCCGATTATTGTCGCTCCTGCTAGTATACTGCTAACTTGGGAGGATGAATTCAAGAAATGGGACATCGGAGTTCCATTTCACAATTTAAGCAATCCTGAGTTATCTGGTAAAGAGCATCCTGATGCGGTTGGAACGTTTGATATGTGTAATACTCAGCATAATGTTCATGAAACGCGGATGGCAAAACTGATTTCGTGGTTCAAAGAAGCAAGCATTCTTGGAATCAGCTACAATTTGTTTGGGAAAAAATGCCAAGATAAGAAAAAGCATGAAAATGTGAATGAGAGAGAAGGAAACTGTGATATGCGAAAGGTTCTACTTAATTCTCCTGGTTTGTTAGTTCTAGACGAAGGACACACACCAAGAAATCAAAGAAGTCATATTTGGAAGGTGTTTTCGAAGCTTCAAACGCAGAAGCGTATCATCCTTTCCGGAACTCCATTCCAGAACAATTTCTGGGAGCTTTACAGCACCTTAAGCTTGGTGAAACCTTCTTTTCCTAACACGATACCGCCTGAGCTTAAAAGTTTTTGCCAAAATCAGGGATATAAATCATCTAAAAAATGGAATTGGGAACCAGCGTTGCTCAACAAAACACGAGACCCTTCTGATGATCAGATTAAGAAGTTTAAATTGCTAATGGATCCCTTTGTGCATGTGCACAAAGGCGCAATCCTTGAAAGTAAGCTTCCCGGGTTAAGGGACTGTTTGGTGACTTTGAAGGCTGGTAGTCTGCAGAATGAAATTCTGAAGAGCATTAAACGTTCTCAGAACACAATATTTAACTTTGAACGTAAGGTAGCATTGACATCCGTCCATCCATCGCTTTTCCTTGAATGTGCTCTTTCAGAAGAAGAAAAATCTGCTCTCGACAAGGATCATCTGGAAAAGATTAGACTGAACCCACATGAAGGTGTCAAAACAAAATTTTTGTTCGAGTTTGTTCGGCTATGTGATGCTTTTCACGAGAAAGTTCTTGTGTTCAGCCAATTCCGTGCTCCTTTACAATTGATTAAAGACCAATTAAACTCCGCTTTTAAATGGTCTGAGGGAAAGGAAGTGCTGGTCATGTCTGGCGAGGATCCTCCAAAGGTCAAGCAATCCGTAATCCACAGCTTCAACGATGAAAATTGCCAAGCAAAGGTTTTACTTGCATCTACAAAAGCTTGTTCGGAGGGAATTAGCTTAGTCGGAGCTTCAAGGGTTGTACTTCTGGATGTTGTATGGAATCCTTCGGTCGAAAGACAAGCTATCAGCCGAGCGTATAGGATTGGTCAGAAAAAAGTGGTATACACATACCATCTGCTCGCTGAAGGGACTACCGAGGAAGAAAAATATGGTAAACAGGCCGAAAAAGACCGGTTATCTGAGCTCGTTTTTTCAGCAAAAAATGCCGCGAATAATGGTGATAAGTCCAAGAGCTCTGCTGTGAACTTCGAAGATAGAGTTCTTGATGAGATGACTAAGCACGAAAAGCTCAAAGGCATATTTGTTAAGTGCGTGGTACTGAGGAAAGAGCGAGACATGGTCTGA 4206 0.3992 MTSVSSRTRSKNVPLFRCLPKKSKRLRKSYEDDMGLDHYVSRCKKMKVKRETFVLPKNVKVISIDDDVEMFDAKDGSFVEKKCGLDEDNPISIGSDEYDESDEEHSVGFGGDNEEEEEEEEEKEGVDVKEEVKNDESKGSGEFDDKVKNFVDLDDSAESGDDSDSVSDESEDDDSDDGDFDVDKVNDIDDDSSSGSPYDDDEEEEEEEVVEEDEDEDEEKEKKKGGRKYLNVVEDLVREVMDRQSGISEMNNEEINVENSPSSTKNEEMKDNSPSVNNGEMEHSGYGEEMKDKNPSVNNEVEHSDYASVATSNSFEKMNGSFVHNDEVEHSDPIKASSSSSNLKETSEIQKEKCMQNVSDDDLNVTKESVNLCGDIDIAKIKVKVEDNADTNECVKVVDSHEGKGKYGKGLDVGGVSLVQTKEEEMKNEPVVFEFKYDAVDRRDRQPLPVPVETPPSIWSFKKVGKVQKTKEDEEEEVLWDEMETALRESKAVSKNEASEGKKAKSVNFTKAKFKSNVKYNAKPNDSVNVADCDKGKKKYVEGLGVGGVSSVQTKQEKMKESEKEKIMENKERDNTGIANIPIEKKESDKEKMMENKERDYTGIARIPIDKKKESIDNHGFNQSVKSPHFMPKELRSLELLAQCYWERKNTMNKDSIVLEVNEDCVDWQDTRPPPVPVVETPQSLWSLKKVEKVQKTKEDEENEVLWDELDTALRESDAVSMIGNLETNEASRSPSCCCEHNIFLDEEIGEFCKSCGVVITEIKYISPLVMDRFPGEGSGKKASFDGVNVSHVDGSQLNVSDNDSETNFSRNEGTVWDLIPGVKQKLYPHQIEGFEFIWKNLAGHTELQKLKNADPCSEGGCIISHAPGTGKTRLTIVFLKAYLKAFPKCLPIIVAPASILLTWEDEFKKWDIGVPFHNLSNPELSGKEHPDAVGTFDMCNTQHNVHETRMAKLISWFKEASILGISYNLFGKKCQDKKKHENVNEREGNCDMRKVLLNSPGLLVLDEGHTPRNQRSHIWKVFSKLQTQKRIILSGTPFQNNFWELYSTLSLVKPSFPNTIPPELKSFCQNQGYKSSKKWNWEPALLNKTRDPSDDQIKKFKLLMDPFVHVHKGAILESKLPGLRDCLVTLKAGSLQNEILKSIKRSQNTIFNFERKVALTSVHPSLFLECALSEEEKSALDKDHLEKIRLNPHEGVKTKFLFEFVRLCDAFHEKVLVFSQFRAPLQLIKDQLNSAFKWSEGKEVLVMSGEDPPKVKQSVIHSFNDENCQAKVLLASTKACSEGISLVGASRVVLLDVVWNPSVERQAISRAYRIGQKKVVYTYHLLAEGTTEEEKYGKQAEKDRLSELVFSAKNAANNGDKSKSSAVNFEDRVLDEMTKHEKLKGIFVKCVVLRKERDMV 1401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g01152 1401 MobiDBLite consensus disorder prediction 156 186 - -
Mepo3g01152 1401 MobiDBLite consensus disorder prediction 284 299 - -
Mepo3g01152 1401 MobiDBLite consensus disorder prediction 325 350 - -
Mepo3g01152 1401 Coils Coil 552 572 - -
Mepo3g01152 1401 MobiDBLite consensus disorder prediction 92 125 - -
Mepo3g01152 1401 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 817 1068 IPR027417 -
Mepo3g01152 1401 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 999 1357 IPR027417 -
Mepo3g01152 1401 Gene3D - 1124 1390 IPR027417 -
Mepo3g01152 1401 Pfam Helicase conserved C-terminal domain 1211 1316 IPR001650 -
Mepo3g01152 1401 MobiDBLite consensus disorder prediction 244 299 - -
Mepo3g01152 1401 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1204 1357 IPR001650 -
Mepo3g01152 1401 Pfam SNF2-related domain 840 1143 IPR000330 GO:0005524|GO:0140658
Mepo3g01152 1401 Gene3D - 797 1089 IPR038718 -
Mepo3g01152 1401 MobiDBLite consensus disorder prediction 126 155 - -
Mepo3g01152 1401 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 556 1399 IPR044567 GO:0080188
Mepo3g01152 1401 SMART ultradead3 823 1068 IPR014001 -
Mepo3g01152 1401 Coils Coil 202 223 - -
Mepo3g01152 1401 SMART helicmild6 1227 1316 IPR001650 -
Mepo3g01152 1401 MobiDBLite consensus disorder prediction 193 218 - -
Mepo3g01152 1401 CDD SF2_C_SNF 1198 1327 - -
Mepo3g01152 1401 MobiDBLite consensus disorder prediction 245 280 - -
Mepo3g01152 1401 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 853 1056 IPR014001 -
Mepo3g01152 1401 MobiDBLite consensus disorder prediction 81 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g01152 Mepo-Chr3 17616360 17622074 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g01152 1215 1374 RAD5 or RAD16-like Gene Family AT5G05130 40.000 1.20e-17 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mepo3g01152 SNF2_N 5.6e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g01152 K10875 - gmx:100812737 817.379