Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g01148 ATGGCTGGTGTTTCTAGCAGAACTCGTAGCAAAAATGTTTTGTTACTGGGTGTTTCTAGCAGAACTCGTAGCAAAAATATTCCATTGTTTGGTTCTATTCCACTTGTTGGTTTATCAAAACGGAGAAAAAGTGTTTTGGACTCTGTTTCTGGTTCTAAGAAAAGGAAGGTAGAAGAAGAACCTTTTGTTGTTCCTAAGAATGTTGAGGTTATTTCCATTGATTATGATGATGGAGATGAAAAGGGGTCAGAGCATTGTGATGAGAGAATTGTTGATGTTGAAAACAAAGTTGAAAGTGATGAAATTGGTGAAAAGGATGAAAGGGAAGTTAAAGAAGAATCTTTTGTGGTTCCTAAGAATGGTGAGGTTATTTCCATTGATGATGATGATAAAGATGAAGAAGGGTCGGTGCAATGTGATGAGAAGATGTTTGAGGGTTGTGTTGATGTTGAAAAAGAAGTACAGACTGAGGAAAGTGGAGGAGGAAGTGATGAAATTGATGCTAAAGATGGAAACATTGTTGATGATGATAATGATGTAGATGATTCTGATGAAAATGAATCTGGAGAAGAAGAAGAAGAAGATGATGATGATGATGATGAAAGTGAAGAAAATGAGACTAGTGATGAGGATTTTATAGTTGATGAGGTGAATGAGATTTCTGAAAGTGATGATGAAAGTTCTTCTGGATCCTCTTCTGTTGATGATGATGATGAGGAGGAGGAGGAGAAGGATGAGGAGGATGATGAGGATGAGGAGGAGAAGAAAAAGGGTGGGCAAAAATACTTCAATGTGGTGGAGGAGTTAGCGAGAGAGGCGAACGATAGACACAGTGAATCCTCTTATGTTGATAATGATGATGGTGAGGAGGAGGAGGAGGAGGAAGAGAAGGACAAAGTGGAGGATTTGAGTAAGATTTGGGAAGAATGTTCCAATGGGTTATTGGAGATGGTGAGAGAGGTGGAGGATCAGAAAAGTGCAATTTCTGAGACAAATAATGTGGAGGTAAACATTGAAAATAGTCCTTCTTCTGTTTGCAATGATGTATCAGAACATGCAGAACATTCTAGTTTAATAACCTTTGAGAAAAAGGATTATTTTGATCCAGTGAAGGGTTGCTTTTCTTCCAACCGGAATGGAGCATCGAAGAAACGCGAATCAAAGAATGTAGGCATAAAAATGCAAAATGTCAGTAATCAATTTGATTTTCAATTTGTTGCTGATCAACCTATAAGTTTTGGTCATTCTAAGGTTCACAAGGGTGAGTCAAATAATGCCAATGCCAAAGCAAAATCCAAAGACGATGCTATAGTTTATGAGAATGTGAATGTGAATGTTGGTGATTCTGATGAAGGAAAACAGAAACATGTCAAAGGTTTAGGTGTTGGAGGAGTTTCTTCCCCTCAAGCAAAACAAGAAAAGACGAGGGATTCAGATAAACCAAAAATGACGGAGAATAAAGGGGGGGATTGTAAAGGCAGATTTAGGATCCGTAACGGTGAGAAGAAGGAATCTATGGATAACAATGGTTTGACTAAAATGTTTGTGCCGAAGGAGCTGTGTTTAGCTAAACTCCTTGCAGAATGCTTTTGGGGCAACAAGAATACAATGAAGAAGGATTCAATTGTGTGGGAGGTGAAGGATGGCAGCGATGATCGTCGAGATAGAGATGCACGGTCACCACCGGTTTGTGTTGAGACACCTCCACAGATATGGAGCCTTAAAAAGGTGGAAGAAGTGCAAAAGACGAAGGAGGAGGAGGAGCAGGAACCGTTATGGGATCAAATGGATACAGCCCTTAGAGAATCTGAAGCTGAATCCATGATTGGAAATTTAGGGACAAATGACATGGGAAATCCATCCACTCTTTGTGAACACGACACTCGTTTCGACGATCAGATTGGTGTATATTGCAGATGGTGTGGTGTGGTTGTCACTGAGATCAAATATGTCTCACAACTGGTGATGGATAGATTTCCCTCTGAAGGTTCTGGAAAAAGGGCTTCATTTGATGATTCAGTAAATGTTTCACACTTTGATGGCTCTCAGTTCAATGTTTCTGATGGCGAATCAGAGACTAATTTCTCTCATAATGACGGCACTGTTTGGGACCTAGTTCCTGATGATGTGAAGGAAACCTCGTATCCTCATCAAAAAGAAGGCTTTGAGTTCATTTGGAAAAACTTGACAGGACACATCGATCTTCACAAGTTGAGTAAAACCGATCCTCGCAGGGAGGGTGGCTGCATTATCTCCCATGCTCCCGGAACCGGAAAGACAAGGTTGACTATAATGTTTCTCATGTCATATCTGAAAGTGTTTCCTAAATGCTTGCCAGTTATTGTTGCACCTGCGAGTTTGTTACTTACTTGGGAAGATGAGTTCAAAAAATGGGACATTGGAGTTCCATTTCACAATTTGAACAATCCCAAATTATCCGGTAAAGAGCATGATGATGCTGTTGATTTTGTTAATTGGTCTAATAAGCGGCTGAGTAAGGATACAACACGGATGGTGAAACTGATTTCGTGGTACAAAGAAAAGAGCATTCTGGGAATCAGTTACAATTTGTACGAGAAGCTAGCTGGAGAAGGGAGATCCAAACGCAGGAAAAAGAGAAAACATACAAATGTGGAGAAGAGGAAAGAAAATGGTGATATGAGAAATGCTTTACTTGAATCTCCTGGTTTGTTAGTGCTAGATGAAGGACACATACCGAGAAATGAAAGAAGTCTTATTTGGAAGGTGTTGTCGAAAATTCAAACCCGGAAGCGGATCATCCTTTCCGGAACTCCTTTCCAGAACAATTTCGTGGAACTGTACAACATTTTGAGCTTAGTGAAGCCTTCGTTTCCTAACACGATACCGCATGAGCTGAAAAAGTTTTGCCTGAAGCAGGAATATAAAAAAGTATCTGAAGAATGGAGTTGGGAAGCCGATTCTGGCAACTCAACCTATAACCCTTCCGACCATAAGATCAAACAGTTGAAATTGCTTATGGATCCCTTTGTTCATGTTCATAAAGGTGCGATCCTTCAAAAGAAGCTCCCTGGGATAAGAAATTGTAAGCTGACTTTGAAGCCGGACAGTTTGCAGAAGCAAATTCTTGACAGCATTCAAAGTCGTCAGAACGCGTTGATCTTTGAGCGTAAGCTGACAATGGCATCCATCCATCCGTCTCTTTTCCTCGAATGCGATCTTCTGAAAGAAGAGGAATCTGTTGTCGACAAGGACCAGCTAGAAAAGCTTCGATTGAATCCATATGTAGGTGTGAAAACCAAATTTCTGGTTGAGTTTGTTAGACTTTGTGATGCTGTTAAAGAGAAAGTTCTTGTGTTCAGCCAATTAATCCGTCCCTTATGCTTAATCATAGACCAATTATCGCACACCTCTTTAAACTGGACAGTGGGGAAGGAAATCCTCTTCATGCATGGAGAGGTTAGTCTAAAGGACAGACAATCCTTAATCCATAGCTTCAATGATGCTAACAGCCAAGCAAAGATTCTCCTTGCATCGACAAATGCTTGTTCCGAGGGAATTAGCTTAGTCGGAGCATCAAGGGTTGTGCTGCTCGATGTTGTATGGAATCCATCAGTCGATCGACAGGCTATCAGTAGAGCATATAGGATTGGCCAGAAAAAGGTTGTATACACTTACCATCTGCTCACTGAAGGGACTGCCGAGAAAATAAAACATCGCAAACAGGCTGAAAAGCACAGGTTATCTGAACTGGTTTTTTCGGCTAAAAATGCTGATAAAGATAAGTCCAAGAGTTGCGCTGTTAACTTTGAAGATAAAATTCTTGATCGGTTGAAACAGCACGAAACGTTCAAAGACGTGTTTGTTACAGTTCAGTCGAAGGAGCGAGATTTGGTTGAGAGTTTCGGCTCTTGA 3894 0.4055 MAGVSSRTRSKNVLLLGVSSRTRSKNIPLFGSIPLVGLSKRRKSVLDSVSGSKKRKVEEEPFVVPKNVEVISIDYDDGDEKGSEHCDERIVDVENKVESDEIGEKDEREVKEESFVVPKNGEVISIDDDDKDEEGSVQCDEKMFEGCVDVEKEVQTEESGGGSDEIDAKDGNIVDDDNDVDDSDENESGEEEEEDDDDDDESEENETSDEDFIVDEVNEISESDDESSSGSSSVDDDDEEEEEKDEEDDEDEEEKKKGGQKYFNVVEELAREANDRHSESSYVDNDDGEEEEEEEEKDKVEDLSKIWEECSNGLLEMVREVEDQKSAISETNNVEVNIENSPSSVCNDVSEHAEHSSLITFEKKDYFDPVKGCFSSNRNGASKKRESKNVGIKMQNVSNQFDFQFVADQPISFGHSKVHKGESNNANAKAKSKDDAIVYENVNVNVGDSDEGKQKHVKGLGVGGVSSPQAKQEKTRDSDKPKMTENKGGDCKGRFRIRNGEKKESMDNNGLTKMFVPKELCLAKLLAECFWGNKNTMKKDSIVWEVKDGSDDRRDRDARSPPVCVETPPQIWSLKKVEEVQKTKEEEEQEPLWDQMDTALRESEAESMIGNLGTNDMGNPSTLCEHDTRFDDQIGVYCRWCGVVVTEIKYVSQLVMDRFPSEGSGKRASFDDSVNVSHFDGSQFNVSDGESETNFSHNDGTVWDLVPDDVKETSYPHQKEGFEFIWKNLTGHIDLHKLSKTDPRREGGCIISHAPGTGKTRLTIMFLMSYLKVFPKCLPVIVAPASLLLTWEDEFKKWDIGVPFHNLNNPKLSGKEHDDAVDFVNWSNKRLSKDTTRMVKLISWYKEKSILGISYNLYEKLAGEGRSKRRKKRKHTNVEKRKENGDMRNALLESPGLLVLDEGHIPRNERSLIWKVLSKIQTRKRIILSGTPFQNNFVELYNILSLVKPSFPNTIPHELKKFCLKQEYKKVSEEWSWEADSGNSTYNPSDHKIKQLKLLMDPFVHVHKGAILQKKLPGIRNCKLTLKPDSLQKQILDSIQSRQNALIFERKLTMASIHPSLFLECDLLKEEESVVDKDQLEKLRLNPYVGVKTKFLVEFVRLCDAVKEKVLVFSQLIRPLCLIIDQLSHTSLNWTVGKEILFMHGEVSLKDRQSLIHSFNDANSQAKILLASTNACSEGISLVGASRVVLLDVVWNPSVDRQAISRAYRIGQKKVVYTYHLLTEGTAEKIKHRKQAEKHRLSELVFSAKNADKDKSKSCAVNFEDKILDRLKQHETFKDVFVTVQSKERDLVESFGS 1297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g01148 1297 Gene3D - 686 1000 IPR038718 -
Mepo3g01148 1297 MobiDBLite consensus disorder prediction 170 253 - -
Mepo3g01148 1297 Pfam SNF2-related domain 730 1040 IPR000330 GO:0005524|GO:0140658
Mepo3g01148 1297 SMART ultradead3 710 958 IPR014001 -
Mepo3g01148 1297 MobiDBLite consensus disorder prediction 119 303 - -
Mepo3g01148 1297 MobiDBLite consensus disorder prediction 254 283 - -
Mepo3g01148 1297 Pfam Helicase conserved C-terminal domain 1103 1211 IPR001650 -
Mepo3g01148 1297 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 693 979 IPR027417 -
Mepo3g01148 1297 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1098 1252 IPR001650 -
Mepo3g01148 1297 MobiDBLite consensus disorder prediction 136 169 - -
Mepo3g01148 1297 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 740 950 IPR014001 -
Mepo3g01148 1297 CDD SF2_C_SNF 1089 1222 - -
Mepo3g01148 1297 MobiDBLite consensus disorder prediction 472 495 - -
Mepo3g01148 1297 SMART helicmild6 1125 1211 IPR001650 -
Mepo3g01148 1297 MobiDBLite consensus disorder prediction 284 298 - -
Mepo3g01148 1297 MobiDBLite consensus disorder prediction 448 495 - -
Mepo3g01148 1297 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 53 1290 IPR044567 GO:0080188
Mepo3g01148 1297 Gene3D - 1017 1291 IPR027417 -
Mepo3g01148 1297 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 894 1250 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g01148 Mepo-Chr3 17558538 17563371 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g01148 1108 1241 RAD5 or RAD16-like Gene Family AT5G43530 37.313 1.22e-15 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mepo3g01148 SNF2_N 2.9e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g01148 K10875 - gmx:100806733 849.351