Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g01135 ATGGATAATTTGAGAAAAGAACAAGATTTGAGTAAACATGAAGTGGGTCAGTACTGGCCATCCTCATCTCTAGGGAATCTTGATTATATCCCACATGAAGCTCTAGAAAATTTGGAATGGTACCCTACTTTTTGGGATGACATGGAGAAATTAGAAAAATTCATCAAATTGGATGAATTAATGGGTGAGAGAAAAACACAAGAAAATCCATCTTTCAATGTGTCAAATGTTCAAATTAATCCACAGGACAATATTGATACAAATGAGCCTAATCATCATGAGAGAATTTGCAGCCATTGTGAGACCAAAGAAACTACTCAAAAGCCTCTGCGAAGGACTAGAGCTAAGACATTCATAGGAGAGAGAAGTTGCAGCCATTGTGAGACCAAAGAGACTACTCAATGGAGGTTGGGTCCTTTGGGGAAGAATACTTTGTGCAATGCATGTGGATTGCGATACAAGCTAAATGGATTGGTTCAAGGGTATAGACCTAAGGCAAGTCCAGCTTTTGATATCAGAAATCATTCAAATTTACACAAGAAGGCGATGAGAAAGGAAGGATAA 564 0.3812 MDNLRKEQDLSKHEVGQYWPSSSLGNLDYIPHEALENLEWYPTFWDDMEKLEKFIKLDELMGERKTQENPSFNVSNVQINPQDNIDTNEPNHHERICSHCETKETTQKPLRRTRAKTFIGERSCSHCETKETTQWRLGPLGKNTLCNACGLRYKLNGLVQGYRPKASPAFDIRNHSNLHKKAMRKEG 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g01135 187 ProSiteProfiles GATA-type zinc finger domain profile. 122 173 IPR000679 GO:0006355|GO:0043565
Mepo3g01135 187 SMART GATA_3 118 172 IPR000679 GO:0006355|GO:0043565
Mepo3g01135 187 CDD ZnF_GATA 123 174 IPR000679 GO:0006355|GO:0043565
Mepo3g01135 187 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 121 163 - -
Mepo3g01135 187 PANTHER GATA TRANSCRIPTION FACTOR 121 185 - -
Mepo3g01135 187 Gene3D - 119 185 IPR013088 GO:0006355|GO:0008270
Mepo3g01135 187 Pfam GATA zinc finger 124 158 IPR000679 GO:0006355|GO:0043565
Mepo3g01135 187 ProSitePatterns GATA-type zinc finger domain. 124 149 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g01135 Mepo-Chr3 17344324 17345297 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g01135 29 183 C2C2-Gata Transcription Factor Family AT4G32890 33.511 1.83e-24 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mepo3g01135 GATA 2.3e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g01135 - - mtr:25499880 320.087