Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g01133 ATGGCTATATTCGACTTCAACTCGAAAATTAAATATCATGAGGAAAACCATGCAGAGCAATTTCATTCTTATATCCCAAAGGAGGTGCTACAAAATTTGGAAAGCTACCCTACTTTTTGGGATACCATGGAGAATAGTTTGCAGGAGGATTTGAATTATTTGCTTTTGTGTGACACTTGTGAGAAAGAAAATGTCAAATTCAATCAATTGGGTGAAGGAAAAACACAAGCTTTTGATGTAACAAATGTTCAAATAAATCAAGAGGAGAATATTGATACATATTTGTCTAATGATTTCGTGTGGCCAAATATTTATGAGAGAGAAATTATCAATTTGGAGCAACCTAGTGAATTACAAAATCAAAAGATTCCTCTTTTGGATGTGTCAAATATTCATGCCATCAATCAAGAGAATCTACCAAAGGAGAAATTGGATACAATAATAGATAAAGAGAATATCAAAGAGGAGCAATATGGTAAAGGAAAAACTCAAAAGCCTCTACGAAGGACTAAAGTGAAGTCAAGTTCTATTAAGAAGAGTAGAGCAAAGAGCATAGATATATATAGAGAGAGAAGTTGCAGTCATTGTGAGACCAAATACACTACTCAATGGAGATTGGGTCCTTTGGGGAAAAATACTTTATGCAATGCATGTGGATTAAGATACAAGTCAAATCGATTGGTTCAAGGGTATAGACCTGCGGCAAGTCCATCCTTTGATTTTAACGGGCATTCAAATTTTCACAAGATGTTGTTGAGAAAGGAAGGATAA 771 0.345 MAIFDFNSKIKYHEENHAEQFHSYIPKEVLQNLESYPTFWDTMENSLQEDLNYLLLCDTCEKENVKFNQLGEGKTQAFDVTNVQINQEENIDTYLSNDFVWPNIYEREIINLEQPSELQNQKIPLLDVSNIHAINQENLPKEKLDTIIDKENIKEEQYGKGKTQKPLRRTKVKSSSIKKSRAKSIDIYRERSCSHCETKYTTQWRLGPLGKNTLCNACGLRYKSNRLVQGYRPAASPSFDFNGHSNFHKMLLRKEG 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g01133 256 CDD ZnF_GATA 192 240 IPR000679 GO:0006355|GO:0043565
Mepo3g01133 256 ProSiteProfiles GATA-type zinc finger domain profile. 191 225 IPR000679 GO:0006355|GO:0043565
Mepo3g01133 256 SMART GATA_3 189 237 IPR000679 GO:0006355|GO:0043565
Mepo3g01133 256 ProSitePatterns GATA-type zinc finger domain. 193 218 IPR000679 GO:0006355|GO:0043565
Mepo3g01133 256 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 189 227 - -
Mepo3g01133 256 PANTHER GATA TRANSCRIPTION FACTOR 138 251 - -
Mepo3g01133 256 Pfam GATA zinc finger 193 227 IPR000679 GO:0006355|GO:0043565
Mepo3g01133 256 Gene3D - 189 243 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g01133 Mepo-Chr3 17335188 17335958 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g01133 182 255 C2C2-Gata Transcription Factor Family AT3G60530 55.263 1.53e-23 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mepo3g01133 GATA 8.2e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g01133 - - tpra:123892034 218.779