Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g01102 ATGAACCTGAAATACGAACAGAGGCTCCAAGTCGCCGCTAAAATAATACTCGACGACGACAAAAGTTCCGGCGACGCAGCGCCGAGTGAAGAAGAGCTTGGGATTAAGGCAAAACTGAAACCTCATCAAGTGGATGGGGTTTCGTGGCTTATAAGGAGGTATAAACTCGGCGTCAACGTTGTTCTTGGGGATGAGATGGGATTGGGCAAGACATTGCAAGCTATCTCATTTTTAAGCTATTTGAAAGTGCGCCAGTTGTCACATGGACCATTTTTGGTTATATGTCCTTTAAGTGTGACAGATGGTTGGATGTCTGAGATAGTCAAATATGCCCCTAAACTAGAAGTCTTCAAATATGTTGGTGATAAAGAATATAGGCGCAGTCTACGTAGGAAAACACATGAACATGTAACAAAGCAGCCGACACATAATGTCATGTTGCCATTCGATGTGCTGTTAACATCATATGACATTGCTCTAATGGATAAGGATTTTCTTTCTCAAATACAATGGCAGTATGCAATCATCGATGAAGCCCAAAGGCTTAAAAACCCGTCAAGTGTTTTATTTAATGTTCTCAAAGATCGCTATATCATGCCAAGACGGTTGTTGATGACTGGCACTCCTATTCAGAACAACCTTTCTGAATTGTGGGCGTTGATGCATTTTTGCATGCCATCTGTTTTTGGGACACTAGATCAGTTCCTTTCTACATTTAAGGACATCAGTGATCTTACCTCAGTTCATGATTCTCCAAAGGTAAAGGAGAGACTTCAAATCCTAAGAAGTGTATTGGCTGCGTTTATGCTCCGACGAACTAAATCAAAGCTTATGGAGTGTGGAAGTTTAGTGCTGCCACCTCTCACTGAGACAACTGTGTTAGTACCACTTGTTAGCCTGCAAAAAAAGGTCTACATGTCAATACTGAGGAAGGAACTTCCGAAGCTAGTCGCACTATCTTCTGGAACATCAAATCACCAATCACTACAGAATACTGTGATACAACTAAGGAAAGCATGCAGCCATCCTTATCTTTTTCCGGGTATTGAACCTGAACCTTATGAAGAAGGTGAACATCTGGTTCAGGCCAGTGGTAAACTACTGATTCTGGACCAACTTCTTCGAAAGCTACATCATAATGGACATCGTGTTCTTCTTTTTGCTCAGATGACACATACACTTGACATTTTGCAGGATTATCTGGAGTTACGTAAGTATTCTTACGAGCGTCTTGATGGATCAATTAGGGCTGAGGAGCGCTTTGCTGCAATAAGAAGTTTCAGCAACTCATCGGCTAATACGGGCTTGAATTTTGAAGCTAACCAAAATGGAGCTTTTGTTTTTATGATCTCAACAAGAGCTGGGGGAGTTGGCTTGAATCTTGTGGCTGCTGATACTGTTATATTCTACGAGCAAGATTGGAACCCTCAGGTGGACAGACAAGCTTTGCAGAGAGCACATAGAATTGGCCAGATGAATCATGTTTTGTGTATAAACCTTGTTACTGAACATACAGTGGAGGAAGTAATTGTGCGGAGGGCAGAAAGAAAATTGCAGCTGAGCCTAAACGTTACAGGCGATAATATTGTGGAACAAGAAGATAAACAATTATCTTCAGTTGGAACTGGTGATTTGAAATCCATCATAGTTGGATTACGTATGTTTGATCCCAATGAAATTAATGATGGAAAAGACAAGGACATGGATTTAACAGAAATTAATGCAATGGCTGACAAAGTGATTGCTATTCGTCATGAACAAATATTTGATAAGGATGACAGGAAATTTGAGGTCAATCCAAGAAACTTTTTAAAAGGATTTGATGTTAAGGAAAGATGTTCTGCTTCTTTCTCTTGTGATCTTGATCTTGATGAGGCATCATATCTTGCTTGGGTTAAAAAATTTGAGGAAGTTTCTAAATCAAGTTGCGACTCAGTTATTGACTTGAAAAGCAGAAGGAACTTGGATGAGGAAAAGAGTCAAAAACTTGAGACTGCAAGGAAGAAGGCAGAAGAAAAGAAGCTGTCTAAGTGGAATGTTGCTGGATACCATTCGTTGAATGTTGAAGACCCTATTAGCCCACCAGATGGGGATACCATATTAGATGCTGGTTCTGTTCATTTTGTCTATGGAGATTGTACAGCCCCTACAAACGTTCCTTCATCTGAACCTGCTTTAATATTCAGCTGCGTTGACACCTCCGGACGTTGGGGCCATGGTGGAATGTTTGATGCACTATCTAAACTTTCATCAAGCATCAGTGATGCATATGAACGGGCTTATGAACATGGGGATTTGCATCTTGGTGATCTCCATCTTATAAGGCTTGAAGATGACGGTGATGATCAAAATTTGGATGGTAATGCTCCCAAAATGGTTGCTTTAGCTGTGGTTCAATCCTACAATCCAAGGCGTAAAGTCCCTCGAAGTGAAATCTCACTTGTCCACTTGGAAAGCTGCTTATCAAAGGCAGCGTTCTCAGCCGCTCAAAATTCTGCATCAATACACATGCCACGGATTGGTTATCAAGATGGATCTGATCGCTCTCAATGGTACACCATAGAACGGCTTCTAAGCAAATATGCCTCCATGTACAACGTATTATTATCGAAGATAATGTTAATGATCCAGGCTGTTTCCAGACACGGGAGGGATAGTTCAGATGGAAAAAAGAGCTTGAAGATACGTTTCCCTATTACCCTATATGTGAACATGTATGTATATAATATAATTCCGGACAACACAAGTGTAATGTTTTGCAAATCCTTTGAAGTGTTAAGAACATAA 2787 0.4062 MNLKYEQRLQVAAKIILDDDKSSGDAAPSEEELGIKAKLKPHQVDGVSWLIRRYKLGVNVVLGDEMGLGKTLQAISFLSYLKVRQLSHGPFLVICPLSVTDGWMSEIVKYAPKLEVFKYVGDKEYRRSLRRKTHEHVTKQPTHNVMLPFDVLLTSYDIALMDKDFLSQIQWQYAIIDEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLDQFLSTFKDISDLTSVHDSPKVKERLQILRSVLAAFMLRRTKSKLMECGSLVLPPLTETTVLVPLVSLQKKVYMSILRKELPKLVALSSGTSNHQSLQNTVIQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLILDQLLRKLHHNGHRVLLFAQMTHTLDILQDYLELRKYSYERLDGSIRAEERFAAIRSFSNSSANTGLNFEANQNGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDRQALQRAHRIGQMNHVLCINLVTEHTVEEVIVRRAERKLQLSLNVTGDNIVEQEDKQLSSVGTGDLKSIIVGLRMFDPNEINDGKDKDMDLTEINAMADKVIAIRHEQIFDKDDRKFEVNPRNFLKGFDVKERCSASFSCDLDLDEASYLAWVKKFEEVSKSSCDSVIDLKSRRNLDEEKSQKLETARKKAEEKKLSKWNVAGYHSLNVEDPISPPDGDTILDAGSVHFVYGDCTAPTNVPSSEPALIFSCVDTSGRWGHGGMFDALSKLSSSISDAYERAYEHGDLHLGDLHLIRLEDDGDDQNLDGNAPKMVALAVVQSYNPRRKVPRSEISLVHLESCLSKAAFSAAQNSASIHMPRIGYQDGSDRSQWYTIERLLSKYASMYNVLLSKIMLMIQAVSRHGRDSSDGKKSLKIRFPITLYVNMYVYNIIPDNTSVMFCKSFEVLRT 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g01102 928 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 285 548 IPR027417 -
Mepo3g01102 928 Gene3D - 284 592 IPR027417 -
Mepo3g01102 928 CDD Macro_Poa1p-like_SNF2 705 863 - -
Mepo3g01102 928 SUPERFAMILY Macro domain-like 706 867 IPR043472 -
Mepo3g01102 928 Gene3D - 12 283 IPR038718 -
Mepo3g01102 928 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 369 537 IPR001650 -
Mepo3g01102 928 Pfam Helicase conserved C-terminal domain 366 490 IPR001650 -
Mepo3g01102 928 Pfam SNF2-related domain 57 345 IPR000330 GO:0005524|GO:0140658
Mepo3g01102 928 Coils Coil 653 673 - -
Mepo3g01102 928 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 51 227 IPR014001 -
Mepo3g01102 928 SMART helicmild6 395 490 IPR001650 -
Mepo3g01102 928 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 31 595 IPR031053 GO:0003678|GO:0006281|GO:0006338
Mepo3g01102 928 FunFam Putative helicase CHR10 283 594 - -
Mepo3g01102 928 Gene3D Leucine Aminopeptidase, subunit E, domain 1 702 869 IPR043472 -
Mepo3g01102 928 CDD SF2_C_SNF 358 501 - -
Mepo3g01102 928 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 272 IPR027417 -
Mepo3g01102 928 SMART ultradead3 35 235 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g01102 Mepo-Chr3 16906054 16914969 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g01102 364 520 RAD5 or RAD16-like Gene Family AT5G22750 33.758 1.04e-19 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mepo3g01102 SNF2_N 3.3e-53 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g01102 K20092 - gmx:100797182 1359.36