Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g01084 ATGGATTTTGGAGGGAACATGTTCTGTCTCAACAACAGAGACCAAAGTATTACTAACAATAACGGTAACAGTAACGGTTTTACTTGGTGTAGTAGTGGCAGTACTACTACTGGTACTACATGGAACACGAATACTTTCAATGTTAATGGGGAAAACAATTCAGTATCCGCTGTCAACCGTAACGAGGCAGGTCTAGCAAACACGCTTATGTACCTGCCTCAAAACAAAGACAGCGGACGACAGTATCGGAGTGCATATGGTGGAGGTGTGTCTCGGGGTCATATGATGCCTGATCCACACCTCACGTGTTTGAAGTTAGGGAAGAGGCATTATTTTGAAGATGTGAGTGGTGGTAGTGGTGGGTTGGCGGGGGAGAAGAAAGGGAAAGGAGGGTATTGTGGTGGTGGTGGGAAGACGGCGGCGGTGGGGGGAGGTTATACGGCGGTGACAAGGTGTCAGGTGGATGGGTGTAACGTGGCATTGATGAATGCTAAGGAGTATCATAGGAGACATAAGGTTTGTGAGATGCATTCAAAGGCACCAAAAGTTGTGGTGTTGGGTTTGGAGCAAAGATTCTGTCAACAGTGTAGCAGGTTCCATGTTGTGTCAGAATTTGATGATTCAAAGAGAAGTTGTAGAAGGAGACTGGCAGGGCACAATGAGAGAAGAAGAAAGAGCTCCCATGATTCTGTTGGGAGGAATTCCTCACAAGGTGGGTGTGCTCTCTCTCTTCTGTCATCTCGGACTGATTCATGGCTTTCACCGGCTGACCTCTCCGTAAGATGCAGTGCTGCATTAAGCGAATTGATAGCAGAAAACCGAGCATCTATAATGGCTAGGCAATATGTCTCAGACAGAGACTGGCATTTGCAGCACCATGCCGTGGAAGATTACAGGGAGATCCAATCAGAGTCCAACTATTTCCCACAACATATGTTTCCGCAGACACATTAG 954 0.4686 MDFGGNMFCLNNRDQSITNNNGNSNGFTWCSSGSTTTGTTWNTNTFNVNGENNSVSAVNRNEAGLANTLMYLPQNKDSGRQYRSAYGGGVSRGHMMPDPHLTCLKLGKRHYFEDVSGGSGGLAGEKKGKGGYCGGGGKTAAVGGGYTAVTRCQVDGCNVALMNAKEYHRRHKVCEMHSKAPKVVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHDSVGRNSSQGGCALSLLSSRTDSWLSPADLSVRCSAALSELIAENRASIMARQYVSDRDWHLQHHAVEDYREIQSESNYFPQHMFPQTH 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g01084 317 Pfam SBP domain 152 225 IPR004333 GO:0003677
Mepo3g01084 317 SUPERFAMILY SBT domain 150 231 IPR036893 GO:0003677|GO:0005634
Mepo3g01084 317 MobiDBLite consensus disorder prediction 216 236 - -
Mepo3g01084 317 Gene3D - 144 213 IPR036893 GO:0003677|GO:0005634
Mepo3g01084 317 FunFam Squamosa promoter-binding-like protein 14 144 213 - -
Mepo3g01084 317 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 44 244 IPR044817 GO:0003677
Mepo3g01084 317 ProSiteProfiles Zinc finger SBP-type profile. 149 226 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g01084 Mepo-Chr3 16570678 16574683 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g01084 103 225 SBP-box Gene Family AT1G27370 54.839 6.56e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mepo3g01084 SBP 2.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g01084 - - tpra:123889927 439.499