Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g01068 ATGGCTCTTACTTCAGCACATGCATTCTATCGTATACTCTTCTTTGTAGGCTCACTCTCAATATTCCTAGTGACCCCTTCCTCTTGTCTTAAACCTAGGAAGCTTCTTAATGCCACTTCATACTTCTCGATTGAAGATTTCTCATCTTCAGTGGCTACTTCTTATGGACCTCCCAACGGTGATGGAAGTGAAGGTGGTGCTTGTGGATATGGAGCTGCTGTTGGGATGCCTCCATTCAACTCAATGATATCAGCTGGAAGCCCTATTATCTATCAATCGGGCAATGGATGTGGTAGATGTTATCAGGTGAAGTGCACAGGAAATCCTGCTTGCTCAGGCAACCCTGTTACTGTAGTTATTACTGATGAGTGTCCTGGTTGCGATCATAATTTTGATTTGAGTGGTAGAGCTTTTGCTTCCATGGCACGTCCAGGTCAAGCTGAAAACCTACACAAAGCTGGGAGAATTCCCGTACAATATACTCGAGTTCCATGCAACTACCCTGGAGTATCAATAGCATTCCGTGTGGATCCTGGATCCAACCAAGATTATTTTGCTACCTTAATTGAATATGAAGATGGGGATGGTGATCTCAAATCAGTTGAACTTAAAGAAGGACTTAGCTCATCAACTTATGAAAGCATGCAACGATCATTTGGTGCTGTTTGGAAATTAAATAAAGGGGCACAATTGAGAGCACCATTTTCTCTAAGGCTAACACAAATTGAGTCTGGAAAGGTATTTGAAGCCAAGAATGTGATCCCTGTAGGTTATAAGCCTGGTCAAACTTTTAGAGCAGTAGGGAATTTTATTTAA 816 0.4191 MALTSAHAFYRILFFVGSLSIFLVTPSSCLKPRKLLNATSYFSIEDFSSSVATSYGPPNGDGSEGGACGYGAAVGMPPFNSMISAGSPIIYQSGNGCGRCYQVKCTGNPACSGNPVTVVITDECPGCDHNFDLSGRAFASMARPGQAENLHKAGRIPVQYTRVPCNYPGVSIAFRVDPGSNQDYFATLIEYEDGDGDLKSVELKEGLSSSTYESMQRSFGAVWKLNKGAQLRAPFSLRLTQIESGKVFEAKNVIPVGYKPGQTFRAVGNFI 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g01068 271 PANTHER EXPANSIN-B3 35 266 - -
Mepo3g01068 271 Pfam Lytic transglycolase 84 160 IPR009009 -
Mepo3g01068 271 PRINTS Major pollen allergen Lol pI signature 142 157 IPR005795 GO:0005576|GO:0019953
Mepo3g01068 271 PRINTS Major pollen allergen Lol pI signature 174 189 IPR005795 GO:0005576|GO:0019953
Mepo3g01068 271 PRINTS Major pollen allergen Lol pI signature 190 205 IPR005795 GO:0005576|GO:0019953
Mepo3g01068 271 PRINTS Major pollen allergen Lol pI signature 105 115 IPR005795 GO:0005576|GO:0019953
Mepo3g01068 271 PRINTS Major pollen allergen Lol pI signature 85 96 IPR005795 GO:0005576|GO:0019953
Mepo3g01068 271 PRINTS Major pollen allergen Lol pI signature 221 238 IPR005795 GO:0005576|GO:0019953
Mepo3g01068 271 SUPERFAMILY PHL pollen allergen 172 265 IPR036749 -
Mepo3g01068 271 Gene3D - 35 165 IPR036908 -
Mepo3g01068 271 PRINTS Expansin/Lol pI family signature 87 105 IPR007118 GO:0005576
Mepo3g01068 271 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Mepo3g01068 271 PRINTS Expansin/Lol pI family signature 153 169 IPR007118 GO:0005576
Mepo3g01068 271 PRINTS Expansin/Lol pI family signature 252 266 IPR007118 GO:0005576
Mepo3g01068 271 PRINTS Expansin/Lol pI family signature 46 61 IPR007118 GO:0005576
Mepo3g01068 271 PRINTS Expansin/Lol pI family signature 212 226 IPR007118 GO:0005576
Mepo3g01068 271 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 183 266 IPR007117 -
Mepo3g01068 271 SUPERFAMILY Barwin-like endoglucanases 40 169 IPR036908 -
Mepo3g01068 271 SMART dpbb_1 83 160 IPR007112 -
Mepo3g01068 271 Pfam Expansin C-terminal domain 172 255 IPR007117 -
Mepo3g01068 271 CDD DPBB_EXPB_N 51 165 - -
Mepo3g01068 271 Gene3D - 166 266 IPR036749 -
Mepo3g01068 271 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 65 170 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g01068 Mepo-Chr3 16018538 16019887 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g01068 1 270 Expansin Gene Family AT1G65680 47.619 4.04e-89 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g01068 - - gmx:548090 363.999