Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g01065 ATGGATAAATACAAGTGCAAACTTTGCTATAGAAGCTTCAACAATGGAAGAGCATTGGGGGGTCACATGAGATCTCATATGATGAACCTTCTTGTTACAAAGCAAGAAGAAGAATCATCGGGAACGGTTCAACTTAGTTTTGAAGCTGAATCAGCACCGTCTTCATCATCGTCATCAGAAGATGGTGACGTTGATGAAAAGGGTCTTAATTATGGTCTTAGAGAGAATCCAAAGAGAAGCATTCGTCTTGTAGATCAAGAGTTTTCTTTTCCACAAGTGGATACAAGTTCTATGATTCTTCAAGATATAGAAAGCGAAACTGAATCATCGAAGAATAATCCAACTCGGAAAAGATCCAAAAGGGTGTGGAAAATTCGCGGGTTTGATCAAAAGTATTACAATGAAACTGCTACGAAGAAAATGAAATTTTTTAACAAGAATGATTCTTCGGTTGTTGAACATGAACCTGTTAGTTCGGTTTCTGATGCAACAACCGAAGAAGATGTTGCATTTTGTCTAATGCAGTTGTCGAGAGACAAATGGAATAGAAAAAATGAACAATATGAAGACGTGGAAGAAGAAGATGACGAAGACGAAGCTGAGGAAGAAGAAGAAGAAGAAGATGAAATTGAAATCGAAAGATCTTTGGAAGATAGTGATGAATCTCAAGAGCTACTAAAAGTATGCAAGAATAATAATAAAGTACGTAAAGGAAGGTACAAATGTGAAACATGTAATAAAGTGTTCAAATCTTATCAAGCATTGGGTGGTCATAGAGCAAGTCACAAGAAGATTAAACCAAACATAACGATGGAAGAATCGTCGCCAGAATTCGAAGTTGTTGAAAAGAAAGTTCATGAATGTCCGGTATGTTTTCGAGTATTTAATTCGGGTCAAGCACTTGGTGGACACAAAAGAACACATGTGATTCATGGATCATCATCAACAACAGTTCCAATTTTCAGCTCAAAAAGAGTTGCAAAAAGTGTTATAGATCTTAACCTTCCTGCTCCAATTGATGATGATGAAGTTAGTCAAATTGAAAATTCTGCTGTTTCTGATGCAGAATTTGTCAAAACTCGTTAA 1086 0.3628 MDKYKCKLCYRSFNNGRALGGHMRSHMMNLLVTKQEEESSGTVQLSFEAESAPSSSSSSEDGDVDEKGLNYGLRENPKRSIRLVDQEFSFPQVDTSSMILQDIESETESSKNNPTRKRSKRVWKIRGFDQKYYNETATKKMKFFNKNDSSVVEHEPVSSVSDATTEEDVAFCLMQLSRDKWNRKNEQYEDVEEEDDEDEAEEEEEEEDEIEIERSLEDSDESQELLKVCKNNNKVRKGRYKCETCNKVFKSYQALGGHRASHKKIKPNITMEESSPEFEVVEKKVHECPVCFRVFNSGQALGGHKRTHVIHGSSSTTVPIFSSKRVAKSVIDLNLPAPIDDDEVSQIENSAVSDAEFVKTR 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g01065 361 MobiDBLite consensus disorder prediction 41 72 - -
Mepo3g01065 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 286 308 IPR013087 -
Mepo3g01065 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 240 267 IPR013087 -
Mepo3g01065 361 MobiDBLite consensus disorder prediction 41 59 - -
Mepo3g01065 361 ProSitePatterns Zinc finger C2H2 type domain signature. 288 308 IPR013087 -
Mepo3g01065 361 Pfam C2H2-type zinc finger 239 264 - -
Mepo3g01065 361 Pfam C2H2-type zinc finger 4 27 - -
Mepo3g01065 361 Pfam C2H2-type zinc finger 285 308 - -
Mepo3g01065 361 ProSitePatterns Zinc finger C2H2 type domain signature. 242 262 IPR013087 -
Mepo3g01065 361 SUPERFAMILY beta-beta-alpha zinc fingers 3 262 IPR036236 -
Mepo3g01065 361 SUPERFAMILY beta-beta-alpha zinc fingers 282 309 IPR036236 -
Mepo3g01065 361 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 360 IPR044303 GO:0006355
Mepo3g01065 361 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Mepo3g01065 361 Gene3D Classic Zinc Finger 237 308 - -
Mepo3g01065 361 Coils Coil 188 213 - -
Mepo3g01065 361 MobiDBLite consensus disorder prediction 189 218 - -
Mepo3g01065 361 MobiDBLite consensus disorder prediction 185 219 - -
Mepo3g01065 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 26 IPR013087 -
Mepo3g01065 361 SMART c2h2final6 286 308 IPR013087 -
Mepo3g01065 361 SMART c2h2final6 4 26 IPR013087 -
Mepo3g01065 361 SMART c2h2final6 240 262 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g01065 Mepo-Chr3 15875451 15876742 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g01065 1 347 C2H2 Transcription Factor Family AT3G60580 43.417 3.68e-71 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo3g01065 zf-C2H2_6 5.6e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g01065 - - tpra:123890030 565.844