Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00996 ATGATTCCTTCCTCTAGGGACCTAATCTCTATGATCACAACGCCTTTATACAATGATGCTCACAACAATGGGTCCCAGAGAGAATTTCTCATTGCTCGAAATCCGATGATATTTGCACCCAACAATAACAAAATAGAAGCCATGCATGGTTGCCTGAACACTAGAGAAGGAATTTGGGATTTGTCCAAGAAAAATATCTTTCAATATGGTGAAACTTCACAACCTAGGGTGAGTCCAGATCTATCACCATCATTAGTTTATGATGTACATCAATCTGTTTCAATTAAGCCTAAACTTCAAGGCGATATTTTTTTCTATGGTGGACTTGGAAACGAACCCCAAGAAAATGATGGGCCTATTCTTACTGGTCAGAGGCGGAAAAAGAGGATTCGGAATAACAGCGAGATTCAACATAAGGATCTTAATATAATCAAAGGCCAATGGACAACAGATGAGGACAGGATTCTTGTCCAATTGGTTGATCGCTTTGGGCTTAGAAAATGGTCCAAGATTGCTAAGTATATGAATGGCAGAATCGGGAAACAGTGCAGAGAGAGATGGAATAACCATCTTTGTCCGGACATTAAGAAGGAGGCATGGACCGAAGAGGAAGACAAAATATTGATCGAAGCTCACAAGATTGTTGGTAACAAGTGGGCGGAAATTGCAAGGAGATTGCCGGGGCGCACCGAGAACTCTGTCAAGAACCACTGGAACACCACTAAGCGCCGCCAGAAAGACAAGAAGATGAATAGGGGTAACAGTTCAAAGGGAACACTACTTTTGAAATACATAATGGAAGTCAGTTCTGCCAAGAAAGTTGAAAAGGAGATGATGAATAATTCTATGAGCATGCTAAATATTGAGAATCAACCAAATTATGAAAGTTCTGAGAGTGATTTTTTCTCTGAAGGTTTGACTACTCAAGAAGAAGAAATTGGTGGCTATGTGCCAATGATGTTCAATGATGATGATGATGGAATGGCAAGTGGGTCTGGATCAAATAGAATGGAGTTTTTTCCTGAAATTCCTATAAAGCAGAAAATTGACCTCATGGAGAAGATATATAGAAGCCCCTAA 1080 0.4 MIPSSRDLISMITTPLYNDAHNNGSQREFLIARNPMIFAPNNNKIEAMHGCLNTREGIWDLSKKNIFQYGETSQPRVSPDLSPSLVYDVHQSVSIKPKLQGDIFFYGGLGNEPQENDGPILTGQRRKKRIRNNSEIQHKDLNIIKGQWTTDEDRILVQLVDRFGLRKWSKIAKYMNGRIGKQCRERWNNHLCPDIKKEAWTEEEDKILIEAHKIVGNKWAEIARRLPGRTENSVKNHWNTTKRRQKDKKMNRGNSSKGTLLLKYIMEVSSAKKVEKEMMNNSMSMLNIENQPNYESSESDFFSEGLTTQEEEIGGYVPMMFNDDDDGMASGSGSNRMEFFPEIPIKQKIDLMEKIYRSP 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00996 359 Pfam Myb-like DNA-binding domain 148 205 - -
Mepo3g00996 359 Gene3D - 198 260 - -
Mepo3g00996 359 PANTHER MYB PROTEIN-RELATED 126 277 - -
Mepo3g00996 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 193 246 IPR017930 -
Mepo3g00996 359 SUPERFAMILY Homeodomain-like 142 238 IPR009057 -
Mepo3g00996 359 CDD SANT 199 242 IPR001005 -
Mepo3g00996 359 FunFam Transcriptional activator Myb isoform A 144 197 - -
Mepo3g00996 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 191 IPR017930 -
Mepo3g00996 359 SMART sant 196 244 IPR001005 -
Mepo3g00996 359 SMART sant 144 193 IPR001005 -
Mepo3g00996 359 ProSiteProfiles Myb-like domain profile. 140 191 IPR001005 -
Mepo3g00996 359 ProSiteProfiles Myb-like domain profile. 192 242 IPR001005 -
Mepo3g00996 359 CDD SANT 148 191 IPR001005 -
Mepo3g00996 359 Gene3D - 144 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00996 Mepo-Chr3 14320525 14323059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g00996 139 265 MYB Transcription Factor Family AT4G18770 66.142 2.83e-57 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mepo3g00996 Myb_DNA-bind_6 9.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g00996 K09422 - psat:127129356 429.098