Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00991 ATGACAATGATGAGTTTGATGTTCTCCATTTTCCCACATGTTCTTTATTTATTCTATGATGTTCTTCCTACCTTTGGTGGTGCAAAAACGTTGACTAAAAAGACCTCTCGTAAAAAGAAAAAAAAGACATCTAGTGAAAACAAGTTGACTCAAAAGGGCTTTGATGTTCCTTGTATTGATCAGTTAAGGGAAGAGCTTTCTTGCGCAATGTGTTTTGAGTTATTCTTTGAGCCAAGTACCACTCCTTGTGGTCACAGCTTTTGTAAGATATGTCTGCAATCTACTGCAAACAAATGGAGAAATTGTCCCAATTGCAAACAATCGATAAGCAATGCAGGATCCTTCCCTGTGAATACGACTCTCTGGAACACGATTCAACTCCTTTTTCCCAAAGAAATTGAAGTGAGGAAAGTCGTTGCTTACAGCTTAAACAATAGACCAGCAACTTAG 450 0.38 MTMMSLMFSIFPHVLYLFYDVLPTFGGAKTLTKKTSRKKKKKTSSENKLTQKGFDVPCIDQLREELSCAMCFELFFEPSTTPCGHSFCKICLQSTANKWRNCPNCKQSISNAGSFPVNTTLWNTIQLLFPKEIEVRKVVAYSLNNRPAT 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00991 149 ProSiteProfiles Zinc finger RING-type profile. 68 106 IPR001841 -
Mepo3g00991 149 SUPERFAMILY RING/U-box 60 130 - -
Mepo3g00991 149 SMART ring_2 68 105 IPR001841 -
Mepo3g00991 149 ProSitePatterns Zinc finger RING-type signature. 83 92 IPR017907 -
Mepo3g00991 149 PANTHER UNCHARACTERIZED 32 137 - -
Mepo3g00991 149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 136 IPR013083 -
Mepo3g00991 149 Pfam Zinc finger, C3HC4 type (RING finger) 68 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00991 Mepo-Chr3 14249097 14250319 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g00991 49 110 RAD5 or RAD16-like Gene Family AT5G22750 32.895 5.75e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g00991 - - lsv:111921741 134.806