Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00990 ATGGTGGAAAGTGATGAACAAAAACGAAGCCCTGTGATCCGAAAGAAAACAGCGACGAATAGCCAAAACATGGCTTCGCTTATCAGTCCGAGATTCAAATCTGCTGCTGCTATGGCTGGTTGGGATGAAGAAGCAATTTTACTTGCAACCCTAATTGTTGAAGATACCCCTGATCGAGATCGAGATTCTAAACAGAAAAGACGTTTTGTTTTAAATTCGAAATCTCCGCTCTCCAATTCATCAAGGAAACGCAGAGCTAGGAATCCACCGCAACCAATTGTTCTGGATCTTGATGAAGGAGAAACCCCCAAGAAAGATAGTGGGAAAAAGAAGAAAGAAAAGAAAAATTGTGTTAATGAAGGAAGTAAAGTAGGAGAAAAGGAATTGACTCAGAAGGGATCTGATGTCAATTCGACTAGTTCTTCTGCTGCTCTTCCTTGTATGGATAAGCTAAGAGAAGAGCTTTCATGTGCTATTTGTTTAGAGATATGCTTTGAGCCAAGTACCACTCCTTGTGGTCACAGCTTTTGTAGAAAATGTCTGAGATCTGCTGCAGACAAGTGTGGCAAAAAGTGTCCTAAATGCAGACAATTGATAAGCAATGGACGATCGTGCACTGTGAACACTGTTCTGTGGAACACAATTCAGCTCCTATTTCCTCAAGAAATTGAAGCTAGGAAAGTTGCTGCTAGCACCTTAAATAATAGACAAGAAGCAGCTCAGAATCCAATTCCAGAAACAGCATTTTACAATAACCGAAGGAATAGAAGCATTCAGCCATATCCATCAAGTAGGGGTATGAATTCTAGAAGAAACGAGGAAATAATACTGGATGATGATGAGGATGCTGAATTGGCTAGAAGGTTACAGAGAGAACTTGATGGACAAAACAACAACCATAGAACATCGACAACAACTAGGGTTCATGGTGGTAATTCAAGGAATCAAACCTCATCATCATCAATAAGTGTAAGAGGGAGGACAAGAAGAGGGGTTTCAGGCCAAGATGAAGATGCTGCAATTGCTCTAAGGTTGCAAAGAGAGGAGTTTATGCAAGCTTTTACTAGTAGAAACCAGGAACAGTCATCTTCGTCCAATTTATTAGCTAGAGCAAATTTGAGGGCTATGGCAACTAGAGCGATGGATCTCCGTATTAGAGATCGAAGGATGTAA 1173 0.4075 MVESDEQKRSPVIRKKTATNSQNMASLISPRFKSAAAMAGWDEEAILLATLIVEDTPDRDRDSKQKRRFVLNSKSPLSNSSRKRRARNPPQPIVLDLDEGETPKKDSGKKKKEKKNCVNEGSKVGEKELTQKGSDVNSTSSSAALPCMDKLREELSCAICLEICFEPSTTPCGHSFCRKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEIEARKVAASTLNNRQEAAQNPIPETAFYNNRRNRSIQPYPSSRGMNSRRNEEIILDDDEDAELARRLQRELDGQNNNHRTSTTTRVHGGNSRNQTSSSSISVRGRTRRGVSGQDEDAAIALRLQREEFMQAFTSRNQEQSSSSNLLARANLRAMATRAMDLRIRDRRM 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00990 390 MobiDBLite consensus disorder prediction 296 328 - -
Mepo3g00990 390 MobiDBLite consensus disorder prediction 54 142 - -
Mepo3g00990 390 SMART ring_2 157 195 IPR001841 -
Mepo3g00990 390 ProSitePatterns Zinc finger RING-type signature. 172 181 IPR017907 -
Mepo3g00990 390 MobiDBLite consensus disorder prediction 291 335 - -
Mepo3g00990 390 Pfam Zinc finger, C3HC4 type (RING finger) 157 195 IPR018957 GO:0046872
Mepo3g00990 390 MobiDBLite consensus disorder prediction 238 279 - -
Mepo3g00990 390 MobiDBLite consensus disorder prediction 70 86 - -
Mepo3g00990 390 ProSiteProfiles Zinc finger RING-type profile. 157 196 IPR001841 -
Mepo3g00990 390 SUPERFAMILY RING/U-box 149 220 - -
Mepo3g00990 390 MobiDBLite consensus disorder prediction 1 26 - -
Mepo3g00990 390 MobiDBLite consensus disorder prediction 238 270 - -
Mepo3g00990 390 PANTHER UNCHARACTERIZED 334 381 - -
Mepo3g00990 390 MobiDBLite consensus disorder prediction 98 130 - -
Mepo3g00990 390 MobiDBLite consensus disorder prediction 54 69 - -
Mepo3g00990 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 226 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00990 Mepo-Chr3 14242616 14245016 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g00990 94 200 C3H Transcription Factor Family AT2G42030 30.909 1.41e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g00990 - - gmx:102666585 408.297