Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00958 ATGTTGGCAGCATCTATAGCTGCCGAGGAAAATGAAATACGATCCAGAGAAGGAATGACATCTACTGTAATTAATTCTTCAGATGCAGACGAAGAGACTATACTGCTCACAGCCAATGAGGAAGTTGATTTAGCTGTTTTAGCTGCTCTGCCACACTCGATGCAACTTGATATTCTTGCGCAGCTCAAAGGGAAGAAAGCAGAAGGACTAATGAAGCAAGTTGACAGCCAAATAAGACATGGGGTCAGTGATTGTGGCAAGGGTAAAGGGATTATTTTCAATGAAACTGACATGGTTGGGTGCAGCTCAAAATGTGACGTCAATGGGACATCAAGCAGTGACAATCAAAACAGAATTGATGAAATGTTAGCCGCATGTATCGATATGGAGGAAAGTGCGAAGTTAGTAAAAAATGTAACAAGTTCAAGTTCTCTCGGGGATTCCACCAATAAGGAAAAGGATGGTAACTATGATGAAGATGAAGACGAAGAGATGATACTGCCATCTATGCACAGTGAAGTTGATCCAGCTGTTCTGGCCTCTCTGCCTCCATCAATGCAACTTGACCTGCTTGTTCAGATGAGAGAGCGGTTGATGGCAGAGAACAGACAAAAGTATCAAAAAGTCAAGAAGGATCCTGCAAAGTTCTCTGAGCTACAAATAGAAGCTTACCTTAAAACTGTTGCTTTCCGTCGCGAGATAAATGAAGTGCAGAAGGCTTCTGTTGGAGGAGGAGTAGGTGGGGTACAAACTTCACGGATTGCATCTGAAGCCAACCGAGAGTATATATTCTCGTCATCTTTTTACGGTGACAAACAAGGACTTGCCTCCACCAGATTAGAGAGAAATGTTGAAGATACACAACAAATGCAACGGGGAACACATCCTTCACATAATTTTGTAAATAACATAGCAGCAGGAAATGTTTCTAAGACTTCAGCTGGATTGGTTGGTAATGATTCTAGTGAGCCTGTTGATGAAAGTATTGAGACATATCTAGATGAGAGGGGTCGGTTTCGAGTTAGTAGGTCAAGAGCTATGGGGATGCGTATGACCCGCGATATACAAAGGAATTTGGATTTGATGAAGGAGATTGAGCATGACAGGACATATGTGAACAAGGTTGGTAACATTGAAACAGTGCCTAATACAGATAATAATCCTTTAGAAGGTTCTGGGAATCAGCTTAGTGGTAAAGCACAAGAGTTGAATTTAGAATTAGTTGGAGAGAATGTGGAAAATGAGAAATTAATGCTTGGTAAGGATACTTCTATAGAGATATCCTTTGAATATGATTGCAAGAATGAATTTGCAAGCGGTGGGGATGATATATTTGCCAGTTTAGTAGGAGGAATATCTATGGAGCACTCTCATGCTGATGATACTGTGGTGAATGATCAACCTTCTGGTTCTGATTCAGATTGTGATTGGGAAGAAGAACCTGTTCAGGATAAGAATACAATTTTTCCTGGATATAATGAAATGGGATTGAAGTCTTCAGGTGAGTATGATGATAATAATAATGATGATAATGATAGTGAAGTAGAATGGGAAGAAGGGGATTGTAATGGCACTACAAGTACCTTGTGTCCAGCTGAGTCGGGAAAGGTGGCATCAAAAGGGCGCTTGGAAGAGGAGTCTGATTTACAGGAGGCGATTAGGAGAAGTATTGAGAGTACACGGGATGGGAAACTTAAATACGTGTCATCTTCAGACGAGCATTCAAGTGCTTATGAGAATAAATTAGATCCTAATTTAGAACATGGTGACAACGGTGGTTTTGGCTCAAACCCAATGGATTTAAATGATAATATGGTGGGTTCCAATTTGCCTAGGGAAGGTCATAATGAACAAGGTGAATTACATGAAACTGTAGGAGACAAAAGGGAAAATTATGTGACTAGAAACAACCCAGAAACTTCCCATTTCAACGGAAGTCAGTCAAAGTCATTTGTGGCAATTAATTCCAATGACACAGATACATTGATTAACGAACCTAGCAAACTGGATGGACACGATATTTCTGAAAATTCAATTTCAGATACAACTGCCATGATGATGGATGAAGTTCCTAATCCTATTGTTGCAGAGGAATCATTGGATAATCATAATGATGGTAAAACGTCTTTCTGTTGTAACAATTTGTCCAACGTTGGTGTGACTGAAGAGGAGAAAAATAAGCATATTAATGAATCTGAACCAATGAGTAATTCTACTGGCAATACAAATACTTCTATTCTTTCCATGGTCGCATCCTTAAAAGGAGCTAAAAAAGACATTGATATGGAGCTAAAATTGCCTTCAGTTAACAATGATGGAAATTTGTCTATGGAAAGGACTACTAACTTTTCCCAAGGCTCAATGAGCACCCCAGGAGATTTTCCTGTACAATTGGATGAGGTTCAATTGAATGAAGAAATGCAAATTCTTGATCGGGAATATAGGAACCTAGAAAATGAGCAGAGGAAGCTTGAGCGTAATGCAGAGTCCGTTGACAGTGAATTATTCACTGAATGTCAGGAACTACTGCAAATGTTTGGCTTGCCATATATTATTGCTCCTATGGAAGCTGAGGCACAATGTGCATACTTGGAACTCTCAAAACTGGTTGATGGTGTTGTGACCGATGACTCTGATGTCTTTTTATTTGGGGCACGCAGTGTTTACAAGAATATATTTGATGATCGCAAATACGTAGAGACATACTTCATGGAGGATGTTGAAAAGGAGCTTGGATTGAACAGAGAAAAATTAATTCGCATGGCACTACTTCTCGGGAGTGACTATACTGAAGGTGTAAGTGGGATTGGCATTGTTAATGCTATTGAGGTTTTAAACGCGTTCCCTGAAGAAGATGGATTCCTGAAATTCCGGCAGTGGGTTGAGTCACCAGATCCCACCATCCTTGGAAGGTTGGATGCAAAATCTGTATCTAAGAAAGGGTCAAAACTTGAAGAAAAGGAGTCGCCTGATTACATCCAAGAAACAAAGCAAACTTTCATGGATAAGCATAGAAATGTTAGCAAGAATTGGCATATTCCTTCTTCTTTTCCAAGTGAAACAGTTATATCTGCTTACATATCTCCACAAGTTGATAAGTCAACCGAGCCTTTCGCATGGGGAAAGCCAGATCAGCTTGTTCTTCGCAAAATGTGCTGGGAGAAATTTGGGTGGTCTAGCCAGAAAGCAGATGAGTTGTTATTACCTGTTTTAAAGCAATACAACAAACATGAGACTCAATTGCGTTTGGAGGCATTTTATAGTTTCAACGAAAGATTTGCAAAAATTCGTAGCAAGAGAATCAAGAAAGCAGTAAAAGGAATTACTGGTAAGCCACCTTCAGATTTAATAGTTGATTCTTCAGAGAACATGTCCAAGGGTACGAAAAATGGGATAGGAAGTCCTGTTGACCCGGAGGATGACAAATTGGAGACTCCGAAGGTAACAGAAAAAAGTCTTGCAGCTAGGAAGAAATCAAAAACAAAAGAGTCAACGAAAAGGAAACATGATGGGAATACTGTTGCTAAGCAACATACAAAGAAAAAGAAAATAAATGATGTTTCTTCTTCTGCACCTGCTGCATCTGAGATTGAGAATTTACAGCCATGTATGCAAACAGAAGGGCAATATGATGGTGAGGATTTGGTTCAGAAAAAAAGTAACCGTGGGCGAGGAAGAGGTAAAGGTGTAGGAGTAAAAAGAGGCGTGGAGAAGAAAAGTCGTCATTTTCAACCGTCTGAAACTGAAACATCATCTAGTAGTCTCGATATTGACAATCACGAGCCAAGAGCACAAGTTGATCTGTCAACAGTTCCTGAAGTTAAGCGAAGGTCAATGCGATCTCGGAAACCTGTCAACTATTCTTTCGAGGACCTTGAAGTTGAAGATGCTGTTGATTCATTTGATCAGAGCAACCAGAAATGCTTGCGTCGAGAGCTAGTAGAAGAAAAATCTACGTGCATCGATGGTTCCAGCATAGGGAAAGAAAGCGGTATGCTAGAAGTTCCTCTGAAGGATAACTTGCCGGCAGACTATCTGGAGCCAGAAACAGATGCTGGTGCAGCAACACCAATGACTCACCCTTCAGATGACTATCTTGAAATGGGAGGTGGATTCTGTGTAGACGATAATGAGATGGATAACAACCGTGATGCAATTGATGACACGAACACGAGTACTGCAAACTCTCCACCCTTTTCTGAATTATTGGGTGAAACCGACCTTGATAAAAGTAGTTCAGATATATTATTTTTTGGTGCCGAAAAGGCTACAAGTGAGATACAAGACGGAGGGGCATGTAAAAACTCCAAATTGCCAAATGACCAGCTTCTAAATGCTGACATAGGGGTATTAATACCGGAGAATGCTCATCACAATAGTGAGAGCTCCAACGTAGCTTTTAGCGCCATGCCGTTTTTGAGGAAGAAAAGAAAGAAATGA 4440 0.4032 MLAASIAAEENEIRSREGMTSTVINSSDADEETILLTANEEVDLAVLAALPHSMQLDILAQLKGKKAEGLMKQVDSQIRHGVSDCGKGKGIIFNETDMVGCSSKCDVNGTSSSDNQNRIDEMLAACIDMEESAKLVKNVTSSSSLGDSTNKEKDGNYDEDEDEEMILPSMHSEVDPAVLASLPPSMQLDLLVQMRERLMAENRQKYQKVKKDPAKFSELQIEAYLKTVAFRREINEVQKASVGGGVGGVQTSRIASEANREYIFSSSFYGDKQGLASTRLERNVEDTQQMQRGTHPSHNFVNNIAAGNVSKTSAGLVGNDSSEPVDESIETYLDERGRFRVSRSRAMGMRMTRDIQRNLDLMKEIEHDRTYVNKVGNIETVPNTDNNPLEGSGNQLSGKAQELNLELVGENVENEKLMLGKDTSIEISFEYDCKNEFASGGDDIFASLVGGISMEHSHADDTVVNDQPSGSDSDCDWEEEPVQDKNTIFPGYNEMGLKSSGEYDDNNNDDNDSEVEWEEGDCNGTTSTLCPAESGKVASKGRLEEESDLQEAIRRSIESTRDGKLKYVSSSDEHSSAYENKLDPNLEHGDNGGFGSNPMDLNDNMVGSNLPREGHNEQGELHETVGDKRENYVTRNNPETSHFNGSQSKSFVAINSNDTDTLINEPSKLDGHDISENSISDTTAMMMDEVPNPIVAEESLDNHNDGKTSFCCNNLSNVGVTEEEKNKHINESEPMSNSTGNTNTSILSMVASLKGAKKDIDMELKLPSVNNDGNLSMERTTNFSQGSMSTPGDFPVQLDEVQLNEEMQILDREYRNLENEQRKLERNAESVDSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELSKLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMEDVEKELGLNREKLIRMALLLGSDYTEGVSGIGIVNAIEVLNAFPEEDGFLKFRQWVESPDPTILGRLDAKSVSKKGSKLEEKESPDYIQETKQTFMDKHRNVSKNWHIPSSFPSETVISAYISPQVDKSTEPFAWGKPDQLVLRKMCWEKFGWSSQKADELLLPVLKQYNKHETQLRLEAFYSFNERFAKIRSKRIKKAVKGITGKPPSDLIVDSSENMSKGTKNGIGSPVDPEDDKLETPKVTEKSLAARKKSKTKESTKRKHDGNTVAKQHTKKKKINDVSSSAPAASEIENLQPCMQTEGQYDGEDLVQKKSNRGRGRGKGVGVKRGVEKKSRHFQPSETETSSSSLDIDNHEPRAQVDLSTVPEVKRRSMRSRKPVNYSFEDLEVEDAVDSFDQSNQKCLRRELVEEKSTCIDGSSIGKESGMLEVPLKDNLPADYLEPETDAGAATPMTHPSDDYLEMGGGFCVDDNEMDNNRDAIDDTNTSTANSPPFSELLGETDLDKSSSDILFFGAEKATSEIQDGGACKNSKLPNDQLLNADIGVLIPENAHHNSESSNVAFSAMPFLRKKRKK 1479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00958 1479 MobiDBLite consensus disorder prediction 1230 1245 - -
Mepo3g00958 1479 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 913 1095 IPR036279 -
Mepo3g00958 1479 CDD H3TH_XPG 916 1033 - -
Mepo3g00958 1479 MobiDBLite consensus disorder prediction 1116 1130 - -
Mepo3g00958 1479 MobiDBLite consensus disorder prediction 460 550 - -
Mepo3g00958 1479 MobiDBLite consensus disorder prediction 1386 1400 - -
Mepo3g00958 1479 Pfam Ubiquitin binding region 172 199 IPR025527 -
Mepo3g00958 1479 Pfam Ubiquitin binding region 39 61 IPR025527 -
Mepo3g00958 1479 PRINTS Xeroderma pigmentosum group G protein signature 203 228 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Mepo3g00958 1479 PRINTS Xeroderma pigmentosum group G protein signature 1069 1089 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Mepo3g00958 1479 SMART xpgineu 844 913 IPR006086 GO:0004518
Mepo3g00958 1479 MobiDBLite consensus disorder prediction 1104 1281 - -
Mepo3g00958 1479 Coils Coil 800 834 - -
Mepo3g00958 1479 Gene3D - 796 912 - -
Mepo3g00958 1479 Gene3D - 913 1002 - -
Mepo3g00958 1479 SMART HhH_4 915 948 IPR008918 GO:0003677|GO:0003824
Mepo3g00958 1479 MobiDBLite consensus disorder prediction 1135 1185 - -
Mepo3g00958 1479 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 73 - -
Mepo3g00958 1479 CDD PIN_XPG_RAD2 830 1072 - -
Mepo3g00958 1479 MobiDBLite consensus disorder prediction 1186 1206 - -
Mepo3g00958 1479 Pfam XPG I-region 847 928 IPR006086 GO:0004518
Mepo3g00958 1479 MobiDBLite consensus disorder prediction 138 162 - -
Mepo3g00958 1479 MobiDBLite consensus disorder prediction 1 21 - -
Mepo3g00958 1479 MobiDBLite consensus disorder prediction 564 599 - -
Mepo3g00958 1479 ProSitePatterns XPG protein signature 2. 847 861 IPR019974 GO:0016788
Mepo3g00958 1479 SUPERFAMILY PIN domain-like 816 928 IPR029060 -
Mepo3g00958 1479 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 918 933 IPR006084 -
Mepo3g00958 1479 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 864 884 IPR006084 -
Mepo3g00958 1479 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 843 860 IPR006084 -
Mepo3g00958 1479 FunFam DNA repair protein UVH3 793 912 - -
Mepo3g00958 1479 FunFam DNA repair protein UVH3 913 970 - -
Mepo3g00958 1479 MobiDBLite consensus disorder prediction 1343 1400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00958 Mepo-Chr3 13525806 13539769 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g00958 838 945 Core DNA Replication Machinery Family AT5G26680 35.135 3.73e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g00958 K10846 - gmx:100820295 1688.7