Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00836 ATGGTCCCAAACCTCATTGAGTTTGATCGGGTTCATGGACACCCTAAAAATTGTGAACTTTGTGTTTTATGCAACGTTCAAGCATCCATCGTTGTGTTTTCTCCTAGCAACAAATTATTTTGCTTTGGTCAACCAAACTCCGACACCCTTCTCAATAGCTACATCAATGGAACAACCGAGTTTGAGGCTGAAATTCCGGTAGGAAGATCTGATCCTTATGAAGAGCATAATCGTCGATACAAGGAGGCAACGAAATTGTTGGAGATGGAAAAGAAGAAACTAGAAGATGTTAAAAATTTGGCTAAAGGTTGCGAATCAAGGGATTGGTGGAATGACCCTATTGACCAGATGAGTATTGAACAACTTCAAGAATTTATGAATTCTATTAATGAGTTAAGGAGGAATGTGGCTGAATTATATTATGCTCCATTAGGGATGATGAAATTATGA 450 0.3822 MVPNLIEFDRVHGHPKNCELCVLCNVQASIVVFSPSNKLFCFGQPNSDTLLNSYINGTTEFEAEIPVGRSDPYEEHNRRYKEATKLLEMEKKKLEDVKNLAKGCESRDWWNDPIDQMSIEQLQEFMNSINELRRNVAELYYAPLGMMKL 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00836 149 SUPERFAMILY SRF-like 16 57 IPR036879 GO:0003677|GO:0046983
Mepo3g00836 149 PANTHER MADS BOX PROTEIN 17 137 - -
Mepo3g00836 149 Coils Coil 73 107 - -
Mepo3g00836 149 Gene3D - 15 64 IPR036879 GO:0003677|GO:0046983
Mepo3g00836 149 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 42 IPR002100 GO:0003677|GO:0046983
Mepo3g00836 149 ProSiteProfiles MADS-box domain profile. 16 46 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00836 Mepo-Chr3 11947094 11948094 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g00836 16 137 Type I MADS-box Gene Family AT5G60440 29.851 4.03e-18 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo3g00836 SRF-TF 8.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g00836 - - cam:101502875 167.548