Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00801 ATGACTCTCAAAAAGAAAAAGAAAACGAAGGCGCCACTTATTGCTGCTCCAAGAGACCATAATGCTTTGGTACTTGTGATGAAACGTACGCATTGTGAGGCGACGAAGACTCAACAATGGAGGACAGGGCCAGAGGGGCCGAAAACAATCTGCAATGCTTGCAATGTTCGATACAAGTCAAGCCGACTCTGCCCTGAATACCGGCCTGCTGCTAGCCCAACTTTTTCTTCACATTTTCACTCTAAGAGTGATGAGACGCAAGGATAA 267 0.4644 MTLKKKKKTKAPLIAAPRDHNALVLVMKRTHCEATKTQQWRTGPEGPKTICNACNVRYKSSRLCPEYRPAASPTFSSHFHSKSDETQG 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00801 88 Gene3D - 28 84 IPR013088 GO:0006355|GO:0008270
Mepo3g00801 88 PANTHER GATA TRANSCRIPTION FACTOR 6 83 - -
Mepo3g00801 88 Pfam GATA zinc finger 30 62 IPR000679 GO:0006355|GO:0043565
Mepo3g00801 88 CDD ZnF_GATA 30 76 IPR000679 GO:0006355|GO:0043565
Mepo3g00801 88 SMART GATA_3 23 73 IPR000679 GO:0006355|GO:0043565
Mepo3g00801 88 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 30 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00801 Mepo-Chr3 11267276 11267542 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g00801 22 83 C2C2-Gata Transcription Factor Family AT3G24050 66.129 6.62e-25 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mepo3g00801 GATA 1.8e-12 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g00801 - - mtr:11424677 126.716