Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00786 ATGGCTGGTTTTTCTAGCAGAACTCATACCAACAATGTTCCCTTGATCAGTTTTCTTTCAAATGGTGGTTCATCAAAGCGGAGAAAGAGTGATGACGATGATATGCGTTTTGACTCTCTTTCTGGTTCTAAGAAACGGAAGGTAAGAGAAGAACCTTTTCTTATTCCAGAGAATGCTAAGGTCATTTCCATTGATGATGATGAAGGGTCGGAGCAGTGTGATGAGAAGATGTTTGAGGGTGTTTTTGATGTTAAAAAGGAAGTGAAAAGTGGTGAAAGTGGAGGAAGTGGCGAGTTTTATGCTAAAGATGGAACAGTTGAAAACCCGATTACAATAAGTTCAGATGAATATGGTGAAAGTGAAAAAGACCACTCTAAGAAACGAAAGTTAAAAGAAGAACCTTTTGTTGTTCCTGAAAATGCTAAGGTTATTTTCATTGATGTTGGTGATGAGAAGATGTTTGAGGGTGGTTATGATGTTAAAAGTGATGAAAGTGCCGAGTTTGAAGCTAAAGATGGAAACATTGTTGATGAAAAGCGTAGTTGGACACTTGAAAACCCGATTACAATACATTCAGATGGCGAACACTCTGTTGGTTCTGATTCTGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGAACATGATGATAATGTTAAACAGGGAGGAAAAAGTGGAGGAAGCAATGAGTCTGCTGATAAAGATATTTTTTTTGTAGATTTGGATGATTCTGATGAGAGTGATGAAGAACACTCTGTTGGTTCTGATTCTGATTCAGATTCTGATGATGACGATGGTGATGTTAAAGAGGGAGCAAAAAGTGGAGGAAGCAATGAGTTTGCTGATAAAGATGAATTTTTTGTTGATTTGGATGATTCTGATGAGAGTGATGAAGAACACTGTTTTGATTCTGATGAATGTGAAGAAAATGAGACTAGCGACGACGATTTCAGAGTTGATGAGCTGAATGAGATTTCTGACAATGATGACGATAGTTCTTCTGGCTCTCCTTATAATCATGGTAAGGAGAAAGAGAAGAAAAAGGGTGAGCGAAAATACTTTAATGTGGTGGAGGAGTTGGTGAGAGAGGCGAATGATAAACACAATGGAATTTCTGAGATGAATAATGAGGAGGTGAAGGATAAAAGTCCTTCTTCTGTAAACAATGATGAAGTGGAGCATTCAGATTATGGTAGTGTAGCAACTTCTACTACCTTTGAGAAGAAGGGTTCTTCTTCAAACAAGAATGATACATCAAAGAAACAAAAAGAAAAAATGGTGGAAAATGTCGCCGATGATGATGTAAATGTTGCCAAAGCCAAAGAAAGGGCTAAACCTAATGAAACTGCGAATCTTTGTGATGATGTTAATGTTACTAAAGCCAAATGCAAATCCCAAGTCAAAGCCAAAGATAATGCCAAACCTAATGAAAGTGTGAATGTTGCTGATTCTGATGAAGGAAATGAGCATGTCAAAGGTTTAGATGTTGGGAGAGTTTCTTTGGTTCAAACAAAGCAAGAAATGATGAAGGAATCACATAAACAGAAAATGATGGAGAACAAAGGAAGGGATTATAAAGGTATAGCTTACATCCATATTGAGAAGAAGGAATCTATTGATAACAATGGTTTGATACAAAGGGTCAAAAGCACACATTTTACGCGGAAGGAGTTTCTCCTTGCGCAATGCTATCGGGACAGAAAGAATAGCATGAAGTATGATTCAACTGTGTTCGAGTTCAAGGAGGATGGCGTTGATCGACAAGATACACAGCCACCACCGGTTTCTGTGGAGACACCGCCATCGATATGGAGCCTTAAGAAGGTGGAAAAAGTGCAAAAGACCATGGAGGAGGAGGAGAACGAAGTGTTATGGGATGAATTGGATACAATTCTTAGAGAATCTGACGCTGTATCCATGATTGGAAATTTAGGGACAAATGAAGCTACAAAAATAAAAAGCGGAAGTCCATCATCGCGATGTGAACACGACACTTTTCTCGACGAAGAGATTGGTGTATATTGCAAATTGTGTGGTGTGGTTATTACTGAGATCAAATATATCTCACCACTAGTGGTTGATAGATTTCCCTGTGAAGGTTTAGGAAGAAAAGCATCATTTGATGGAGTAAATGTTTCACTGTTTGATGGATCTCAATTCAATGTTTCTGATAAAGATTCAGAAACTAATTTCTCTCGCAATGAAAGCACAGTTTGGGACCTAATTCCAGATTTGAAACAAACTTTATATCCTCATCAGCAAGAAGGCTTTGACTTCATTTGGAAAAACTTGGCAGGAAGCATCAAGCTTCAAAAGTTAAAGAGTGCTAATCCTTGCAGTGAAGCTGGCTGCATTATTTCTCATGCTCCAGGAACCGGAAAGACAAGGCTGACCATAGTGTTTCTCAAGGCATATTTGAAAGCCTTTCCCAAATGCTTGCCGATTATTGTCGCTCCTGCTAGTATACTACTAACTTGGGAGGATGAATTCAAGAAATGGGACATCGGAGTTCCATTTCACAATTTAAGCAATCCTGAGTTATCTGGTAAAGAACATGCTGATGCGGTTGAAACGTTTGATCGGTATAATACACAACATAATATTCATGAAACGCGGATGGCAAAAATGATTTCGTGGTTCAAAGAAACAAGCATTCTTGGAATCAGCTACAATTTGTTTGGAAAAAAATGCCATGATAAGAAAAAGCATGAAAATGTGAAGGAGAGAAAAGGAAACTGTGATATGCGAAAGATTCTGCTTAAAGCTCCTGGTTTGTTAGTTCTAGATGAAGGACACACACCAAGAAATCAAAGAAGTCATATTTGGAAGGTGTTGTCCAAGATTCAAGCGCAGAAGCGAATCATCCTTTCCGGAACTCCATTCCAGAACAATTTCTGGGAGCTTTACAGCACCTTAAGCTTAGTGAAGCGTTCTTTTCCTAACACGATACCGCCTGAGCTAAAAAGTTTTTGCCATAAGCAGGGACATAAATCATCTAAAAAGCGGAGTTGTGAACCTGTTTTGGGCAACACAACAAGAGACCCTTCTGATGATAAGATCAAGAAGCTGAAATTGCTAATGGATCCCTTTGTACATGTTCACAAAGGTGCGATCCTTGAAAATAAGCTTCCCGGGTTAAGGGACTATTTGGTGACTTTGAAGGCAGATAGTTTGCAGAACGAAATTCTGAAGAGCATTAAACGTTCTCAGAACACAATATTTAACTTTGAGCGTAAGATAGCATTGACATCCGTCCATCCATCTCTTTTCCTTGAATGTTCTCTTTCGGAAGAAGAAGAATCTGCTCTCGACAAGGATCAGCTGGAAAGGCTTAGACTGAACCCACATGAAGGGGTCAAAACAAAATTTTTGTTCGAGTTTGTTCGGCTATGCGATGCTTTTCACGAGAAAGTTCTTGTACTCAGCCAATTCCATGCTCCTTTACAATTAATTAAAGACCAATTAAACTCTGCTTTTAAATGGTCTGAGGGAAAGGAAGTGCTGTTCATGTCTGGCAAAGATCCTCCAAAGGTCAAGCAATCCGTAATCCATAGCTTCAACGATGCAAATTGCCAAGCAAAGGTTCTACTTGCATCTACAAAAGCTTGTTCGGAGGGAATTAGCTTAGTTGGAGCTTCTAGGGTTGTACTTCTGGATGTTGTATGGAATCCTTCTGTCGAAAGACAAGCTATCAGCCGAGCGTATAGGATTGGACAGAAGAGAGTGGTATACACATACCATCTGCTCGCTGAAGGGACTATGGAGGAGGAAAAATACGGTAAACAGGCTGAAAAGGACCGGTTATCTGAGCTTGTTTTTTCAGAGAAAAATGCCGCCGATAATGATGATGAGTCCAAGAGCTGTGATATGAATTTTGAAGATAGAGTTCTTGATCATATGACTCAGCATGAAAATCTCGAAGACATATTTGTTAAGTGCGTGGTACTGAGGAAGGAGCGAGATATGGTCTGA 3990 0.392 MAGFSSRTHTNNVPLISFLSNGGSSKRRKSDDDDMRFDSLSGSKKRKVREEPFLIPENAKVISIDDDEGSEQCDEKMFEGVFDVKKEVKSGESGGSGEFYAKDGTVENPITISSDEYGESEKDHSKKRKLKEEPFVVPENAKVIFIDVGDEKMFEGGYDVKSDESAEFEAKDGNIVDEKRSWTLENPITIHSDGEHSVGSDSDEEEEEEEEEEEEEEEDEHDDNVKQGGKSGGSNESADKDIFFVDLDDSDESDEEHSVGSDSDSDSDDDDGDVKEGAKSGGSNEFADKDEFFVDLDDSDESDEEHCFDSDECEENETSDDDFRVDELNEISDNDDDSSSGSPYNHGKEKEKKKGERKYFNVVEELVREANDKHNGISEMNNEEVKDKSPSSVNNDEVEHSDYGSVATSTTFEKKGSSSNKNDTSKKQKEKMVENVADDDVNVAKAKERAKPNETANLCDDVNVTKAKCKSQVKAKDNAKPNESVNVADSDEGNEHVKGLDVGRVSLVQTKQEMMKESHKQKMMENKGRDYKGIAYIHIEKKESIDNNGLIQRVKSTHFTRKEFLLAQCYRDRKNSMKYDSTVFEFKEDGVDRQDTQPPPVSVETPPSIWSLKKVEKVQKTMEEEENEVLWDELDTILRESDAVSMIGNLGTNEATKIKSGSPSSRCEHDTFLDEEIGVYCKLCGVVITEIKYISPLVVDRFPCEGLGRKASFDGVNVSLFDGSQFNVSDKDSETNFSRNESTVWDLIPDLKQTLYPHQQEGFDFIWKNLAGSIKLQKLKSANPCSEAGCIISHAPGTGKTRLTIVFLKAYLKAFPKCLPIIVAPASILLTWEDEFKKWDIGVPFHNLSNPELSGKEHADAVETFDRYNTQHNIHETRMAKMISWFKETSILGISYNLFGKKCHDKKKHENVKERKGNCDMRKILLKAPGLLVLDEGHTPRNQRSHIWKVLSKIQAQKRIILSGTPFQNNFWELYSTLSLVKRSFPNTIPPELKSFCHKQGHKSSKKRSCEPVLGNTTRDPSDDKIKKLKLLMDPFVHVHKGAILENKLPGLRDYLVTLKADSLQNEILKSIKRSQNTIFNFERKIALTSVHPSLFLECSLSEEEESALDKDQLERLRLNPHEGVKTKFLFEFVRLCDAFHEKVLVLSQFHAPLQLIKDQLNSAFKWSEGKEVLFMSGKDPPKVKQSVIHSFNDANCQAKVLLASTKACSEGISLVGASRVVLLDVVWNPSVERQAISRAYRIGQKRVVYTYHLLAEGTMEEEKYGKQAEKDRLSELVFSEKNAADNDDESKSCDMNFEDRVLDHMTQHENLEDIFVKCVVLRKERDMV 1329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00786 1329 MobiDBLite consensus disorder prediction 396 418 - -
Mepo3g00786 1329 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 312 1327 IPR044567 GO:0080188
Mepo3g00786 1329 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1132 1290 IPR001650 -
Mepo3g00786 1329 MobiDBLite consensus disorder prediction 245 271 - -
Mepo3g00786 1329 MobiDBLite consensus disorder prediction 1 24 - -
Mepo3g00786 1329 MobiDBLite consensus disorder prediction 1000 1021 - -
Mepo3g00786 1329 Pfam Helicase conserved C-terminal domain 1139 1244 IPR001650 -
Mepo3g00786 1329 MobiDBLite consensus disorder prediction 88 132 - -
Mepo3g00786 1329 MobiDBLite consensus disorder prediction 291 334 - -
Mepo3g00786 1329 MobiDBLite consensus disorder prediction 116 132 - -
Mepo3g00786 1329 MobiDBLite consensus disorder prediction 159 451 - -
Mepo3g00786 1329 MobiDBLite consensus disorder prediction 473 496 - -
Mepo3g00786 1329 MobiDBLite consensus disorder prediction 342 395 - -
Mepo3g00786 1329 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 781 984 IPR014001 -
Mepo3g00786 1329 MobiDBLite consensus disorder prediction 25 51 - -
Mepo3g00786 1329 Coils Coil 363 383 - -
Mepo3g00786 1329 SMART helicmild6 1155 1244 IPR001650 -
Mepo3g00786 1329 MobiDBLite consensus disorder prediction 159 179 - -
Mepo3g00786 1329 Gene3D - 1050 1322 IPR027417 -
Mepo3g00786 1329 MobiDBLite consensus disorder prediction 272 290 - -
Mepo3g00786 1329 Pfam SNF2-related domain 768 1074 IPR000330 GO:0005524|GO:0140658
Mepo3g00786 1329 SMART ultradead3 751 996 IPR014001 -
Mepo3g00786 1329 Coils Coil 198 227 - -
Mepo3g00786 1329 MobiDBLite consensus disorder prediction 1 51 - -
Mepo3g00786 1329 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 741 988 IPR027417 -
Mepo3g00786 1329 MobiDBLite consensus disorder prediction 419 451 - -
Mepo3g00786 1329 CDD SF2_C_SNF 1126 1255 - -
Mepo3g00786 1329 MobiDBLite consensus disorder prediction 199 222 - -
Mepo3g00786 1329 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 929 1288 IPR027417 -
Mepo3g00786 1329 Gene3D - 723 1019 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00786 Mepo-Chr3 11024039 11028515 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g00786 1142 1274 RAD5 or RAD16-like Gene Family AT5G43530 39.850 1.57e-17 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mepo3g00786 SNF2_N 4.3e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g00786 K10875 - gmx:100812737 824.313