Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00717 ATGGATTGGGATTGGAAAGAGTTTGCTTGGGATCCATCTGGATTGGAGGAGCTGAAAAATGAAGGTGATTCAATGGATTTGAGGCTTGGTGATCAGGCTTCTGATTCAATGGAAAAATCAGTTCATGATTCAGGAAAGGAAGATTCAAAAGCTGTGTCGTCGTCGTCGCCTAGTGGATCGTTGAAAAGATCGCGTTTGCAAAATGGATTGCAGAATATGATTTGCTTGGTTGATGGATGTAACTCTGATCTTAGTGATTGTAGAGAGTATCATAAGCGTCATAGAGTGTGCGAAAAGCATTCCAAAACTCCTGTTGTATTGGTTGGAGGTAAGCAGCAGAGGTTCTGCCAACAATGCAGCAGGTTTCATTCACTTGCGGAGTTTGATGAGGTTAAGAGGAGTTGCAGGAAACGTCTTGATGGACATAATAAGCGCCGAAGGAAACCTCAGCCACCGTCTCTTTTCATGGCTGCTGAGAAGTTCATGTACAATTACAAAGGACCTAGAATCCTACACTTTGGTAGCCCTCAGACATATGTGAATCCTATTATGAGAAACATTTGGCCTGCGACTTCAATAACTGAAGCTGAATCTGGTTACGATCATCAAAGACTTTTGTATCGAATTGACAAACATAAACAGGATAAGGGACATCCTCATTGGCAAGAAATTCTCCCTAAGTCCGGCGATGTTAACAAAGCAGCGCCTGGAATTCCTATCAGCCATCCGATCCGCGGCGCCGTTGGTTCATCCGCCAGTGAAAAAGGCGGTAGGAAGCTCTCTTCTGATGGCAAGCCCGGATCTTTTGACTCGGGTTGTGCTCTCTATCTTCTGTCAACACTTCAAACACAAAGCTCAGAGTTGAGTTTGATGCAGTCAAGCATCAACAACAGTCCAACACAATCTTCGTCTGGAACGTTGCATTTTGATGCTACGAAGGAGTACTCGTACTCTGGAAAAGCGAAAGATAAGCCGAATGGTCCGGTATTTGTTTTAGATGGAAACACAACAAACCTTCATTGCAATGGGATGCTGCAAATGGGTCCTAATGGATTGATCGAAAATGATAACTCAATGACTCTTCCATTCTTCTGGGAGTAA 1101 0.4369 MDWDWKEFAWDPSGLEELKNEGDSMDLRLGDQASDSMEKSVHDSGKEDSKAVSSSSPSGSLKRSRLQNGLQNMICLVDGCNSDLSDCREYHKRHRVCEKHSKTPVVLVGGKQQRFCQQCSRFHSLAEFDEVKRSCRKRLDGHNKRRRKPQPPSLFMAAEKFMYNYKGPRILHFGSPQTYVNPIMRNIWPATSITEAESGYDHQRLLYRIDKHKQDKGHPHWQEILPKSGDVNKAAPGIPISHPIRGAVGSSASEKGGRKLSSDGKPGSFDSGCALYLLSTLQTQSSELSLMQSSINNSPTQSSSGTLHFDATKEYSYSGKAKDKPNGPVFVLDGNTTNLHCNGMLQMGPNGLIENDNSMTLPFFWE 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00717 366 FunFam Squamosa promoter-binding-like protein 14 66 136 - -
Mepo3g00717 366 MobiDBLite consensus disorder prediction 16 49 - -
Mepo3g00717 366 MobiDBLite consensus disorder prediction 237 265 - -
Mepo3g00717 366 Gene3D - 66 136 IPR036893 GO:0003677|GO:0005634
Mepo3g00717 366 SUPERFAMILY SBT domain 73 154 IPR036893 GO:0003677|GO:0005634
Mepo3g00717 366 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 23 304 IPR044817 GO:0003677
Mepo3g00717 366 ProSiteProfiles Zinc finger SBP-type profile. 72 149 IPR004333 GO:0003677
Mepo3g00717 366 Pfam SBP domain 75 148 IPR004333 GO:0003677
Mepo3g00717 366 MobiDBLite consensus disorder prediction 16 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00717 Mepo-Chr3 9996993 10000123 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g00717 24 200 SBP-box Gene Family AT5G50670 46.875 1.71e-45 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mepo3g00717 SBP 1.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g00717 - - lja:Lj1g3v3847150.1 529.25