Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00681 ATGGAACCATCCCTCATGCAAGAAAGATCTGAAACATGTGGTGGATGTGTCATTTCACATGCTCCTGGAGCTGGAGATACCTTATTCATAATTTATTTTCTTGCGCAGGCGAGGAGATTCTTCTTGGACAGTGTTGCAAAGAAAATTAACTCGAATAATGACGAGGAAAAAATGCAGGGTCTACATGTGTTGCGAAAGATCACGAGCGGTTATATCGAAGTTTATGAAAGTGGAAATTCTTCTGATACACTTCCTGAGTTATTTGACAAGTACTTTCAATGGCAAAATGGTAAAGAGATTCTGCTACTAACCGGTGAACTAGATTTATTTGAAAGAGGAAAAGTGATTGATACGTTTGAAGATCCTCGCAGCGGTTCAAAGATACTTCTGGCTTCAATCAACGCTTGTGCTGAAGGTATTAGCTTAACAGTAGCTTCTAGAGTGACTTTTTTGGATTCTGAATGGAACCCTTCAAAAACAAAGCAAGCTATTGCACGCGCTTTACGTCCTGGTCAGCAGAAAATGGTTTATGTGTATCAGTTATTGACGACCAGGTCGATGGAGGAAGATAAGTATCGAAGAACTACTTGGAAAGAGTGGGTTTCTTGCATGATATTTAGTGAGGAGTTTGTGGAAGATCCTTCTAAATGGCAAGCAATAGGAGCAGTAGGAGCTGCATGA 681 0.4038 MEPSLMQERSETCGGCVISHAPGAGDTLFIIYFLAQARRFFLDSVAKKINSNNDEEKMQGLHVLRKITSGYIEVYESGNSSDTLPELFDKYFQWQNGKEILLLTGELDLFERGKVIDTFEDPRSGSKILLASINACAEGISLTVASRVTFLDSEWNPSKTKQAIARALRPGQQKMVYVYQLLTTRSMEEDKYRRTTWKEWVSCMIFSEEFVEDPSKWQAIGAVGAA 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00681 226 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 59 218 IPR001650 -
Mepo3g00681 226 Gene3D - 45 221 IPR027417 -
Mepo3g00681 226 CDD SF2_C_SNF 95 182 - -
Mepo3g00681 226 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 207 IPR027417 -
Mepo3g00681 226 Pfam Helicase conserved C-terminal domain 86 170 IPR001650 -
Mepo3g00681 226 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 6 35 IPR044567 GO:0080188
Mepo3g00681 226 SMART helicmild6 82 171 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00681 Mepo-Chr3 9286141 9287754 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g00681 97 189 RAD5 or RAD16-like Gene Family AT5G05130 40.426 2.58e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g00681 K10875 - pvy:116105601 221.861