Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00680 ATGGCATCCAAATCCACTACCCTCTCTGCCACTTCACAAGATCAAGATGATTCTTCTTCCCACACAAAAGAAGTTGTGAACATGAAGGAGAATGAAGATCAAGCCGCAAACTCCAACTCCAATAAGGCTACCGATTTCGTTAAGCTATCGCAAGATGATTCGATTTCCAAGTTTAAGATGCATGAGGGAAGTTTATTTAGACCTTATCAATCTGGGTCATCATCTTCTTTGGCTAATAAAAACAATGAAGTCAAAGAAGATGAGAACAAACAACATCAATCCTCAAACACCAATTCCAACAAGTCTTTCGATTTCGCAAAGCTATCAAAAGACGACTCGGTTTGCAAGTCGAAGGTGCAAGAGCGCGATTTCTTTAGCCCTATTTCCGCTGGTTCAGCATCTTGTTTTCCACATGACAACAACGAAGGGCAAGGAGATAACAACAATGAACAAAATAACTCGGATTCAAGGTCTTTTTCATGCACGTTTTGCAAGGCAAAATTTTCTACTGCACAAGCGTTGGGTGGGCACCAAAATGCCCATAAAAGGGAACGTGCATTAGAAAAGCAACGTCAACAAAGGTATGATCAAAATCCTTTAGGTTTGGGGGCGCAACCTCACTTTAACCCTTATTTTAGTTATCATAGTACTCTTTTTACACCTTATAAATATAGGCCGCTTGGGGTTAGAATGGAATCGATGATTCAAAAACCACCTTATACTAGCACCAAAATTGCCCCACATAATGTTGGGTATGGTCATGGGTCTTTGTGTTTGAACGAGATATTGAACCCTTCTCTTGTTAGATGGAGAAATAATATTGAGGGTAATAATAGTGGGGTTGGAATTCTAGGTTTTGGTGGTGCAACTAGTTCAAAGATCGAAGATGGTAATAAAATTAGGGCTATTCTAAACTATGGAGATTCTTCTACAAATATTGCTACAAGTTCAAACTCAAACAAAGACAAGGAAATTATTGTGGCTCCTACTTCTACCACAGATGATGTTGATAATCAAGAGCCAAACAATGAAGAACACTCCGATTCAGAATCCTCTGAGCTTGATTTGTCACTCAAACTTTAA 1083 0.3906 MASKSTTLSATSQDQDDSSSHTKEVVNMKENEDQAANSNSNKATDFVKLSQDDSISKFKMHEGSLFRPYQSGSSSSLANKNNEVKEDENKQHQSSNTNSNKSFDFAKLSKDDSVCKSKVQERDFFSPISAGSASCFPHDNNEGQGDNNNEQNNSDSRSFSCTFCKAKFSTAQALGGHQNAHKRERALEKQRQQRYDQNPLGLGAQPHFNPYFSYHSTLFTPYKYRPLGVRMESMIQKPPYTSTKIAPHNVGYGHGSLCLNEILNPSLVRWRNNIEGNNSGVGILGFGGATSSKIEDGNKIRAILNYGDSSTNIATSSNSNKDKEIIVAPTSTTDDVDNQEPNNEEHSDSESSELDLSLKL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00680 360 SUPERFAMILY beta-beta-alpha zinc fingers 156 187 IPR036236 -
Mepo3g00680 360 MobiDBLite consensus disorder prediction 1 47 - -
Mepo3g00680 360 ProSitePatterns Zinc finger C2H2 type domain signature. 161 181 IPR013087 -
Mepo3g00680 360 ProSiteProfiles Zinc finger C2H2 type domain profile. 159 186 IPR013087 -
Mepo3g00680 360 MobiDBLite consensus disorder prediction 339 360 - -
Mepo3g00680 360 MobiDBLite consensus disorder prediction 65 103 - -
Mepo3g00680 360 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 52 360 IPR044246 GO:0009788
Mepo3g00680 360 MobiDBLite consensus disorder prediction 315 360 - -
Mepo3g00680 360 Gene3D Classic Zinc Finger 145 200 - -
Mepo3g00680 360 MobiDBLite consensus disorder prediction 31 47 - -
Mepo3g00680 360 MobiDBLite consensus disorder prediction 1 16 - -
Mepo3g00680 360 MobiDBLite consensus disorder prediction 135 154 - -
Mepo3g00680 360 MobiDBLite consensus disorder prediction 315 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00680 Mepo-Chr3 9282108 9283190 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g00680 151 193 C2H2 Transcription Factor Family AT5G01860 62.791 1.77e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g00680 - - mtr:25497735 528.094