Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00672 ATGCCATCAAATCAAATTGAAGGCCTAAGACGATCAAAACGTAGGAATGTCCAACCCAAACGTTACATAGGTTCTTCTGTTGAGAAGTTGGAAGTTGGTACTTTTCGAACAAGGCCATACAAGAGAGGAGCTTATGTGATAGAAGAGTATGATGGTAAGAGTGGTGAAAAGGTAGGTGATGCTGCTGGCGAAATTCCTTCAAAATATCTTTCAAAGAAGAATGGTGTTGCTGTTGGTGTGTTGACTTTGGAGCCATGCAATATGACTACAATATCAAGTGATGTAGAAGTTGATGATAATGTTACTTTGGGACATTATTATAGTTTCTGCAAAGAGAAGCCTGCAAGGAGGCGAATTCATGGTTCGGATGATATGGATTTTGAAACCAAATGGGAAGGAATTCGTTTCAAAAAAGGAGCTCAAACAAAAAGATATCATTCAATTTGTTTGACAAACAGAAGTCATGTTCAAGAAGAAGGTGGCAGAACGTTAAATGCTGATGCACACAAGGAAGTAATTGACACTTACATGAAGAATTTGGATAGTCTTCCGGCTGAAGAAGAACCAACTATTAACGAAGAAACAAACAAGTTGGAGCACAAGGAGGAAGAAAAAGTGTCGAAAAGCGATGATGAGGAAGAAAATCCTGATGACTTGTCTGCCATTTGGGAAGACATGGATACTGCTATGGCAGCAAGTTGTCTTCTTGATGGAACTGAGGGTTCAAATGAAGAGGTTTTAGCAGACACTGAGGAAATTTGTGAACATGACTATGTGTTAAATGAAGAAATCGGAATATTCTGTCGTAACTGCGGCTCTGTGAAAACTGAGATACGAGACATTACCGAACTCGTTGTGGAAAGACAAAAATGGCACAAAGAGGAGAAACTATACAGTGGAGAAGATAATGATGAACAAAAATCAGAGGCAAAAGTTGATGAAGATGATAATAATGATATGTTCTCAACTCATGCTACTGATCCTGATGAACCAATATCGGCAGAAAAAGACAATGTTTGGGAATTGATTCCAGAACTCAAAGAAAAGATGCATGCGCACCAGAAAAAAGATTTTCAATTTCTTTGGCAAAACATTGCTGGCTCCATGGAACCATCCCTCATGCAAGAAAGGTCCGAAACAAGTGGTGGATGTGTCATATCACATGCTCCTGGAGCTGGAAAAACCTTTCTTGTCATTTCTTTTCTTGTAAGTTACTTGAAGATCTTTCCAGGGAAAAGACCATTAGTCCTTGCACCAAAATCCACACTCTACCCATGGTGCAAAGAGTTCAAAAAATGGAAGGTTCCTGTACCCGTGTATCTTATCCATGGCCGTCAAAACCAGAGGGATTCAATGACTCCAAAACCTAAGGTTCTTCCTGGAGTTCCAAGACCTTCTGGTGATGTAAAACATGTTTTGGATTGTCTTGGGAAAATACAAAAGTGGCATTCACACCCAAGTGTTCTTGTCATGGGCTATACTTCGTTTTTAGCATTAATGAGACAAGATACAAAATTCGCACACAGAAAGTTTATGGCTAAAACTTTGAAAGAAAGCCCTGGAATCTTGATACTTGATGAAGGTCACAATCCTAGAAGCACAAAATCAAGGTTGAGGAAATGCTTAATGGAACTTCCAACAGAATTAAGGATATTACTTTCCGGCACTTTGTTTCAGAACAATTTCTGCGAGTATTTCAATACACTGTGTTTAGCAAGACCAAAATTTGTTCACGAAGTGATACGAGAGTTAGATTCTAAATACTTGAGGAGAGGTAACAAAGAGAAGAAAGCGCAGCATTTTCTTGAGGCGCGGGCGAGGAAATTCTTCTTGAACAACATTGCTACGAAAATCAACTCAGATAATGATGAGCAAAAAATGCAGGGTCTACATGTGCTGCGAAAGATCACGAGCAGTTTCATCGACGTTTATGAAAGTGGAAATTCCTCTGATACACTTCCTGGTTTACAAATATATACACTGCTCATGAATACGTCCGATGAACAGCATGCGATTTTACAGAAACTGCAGAAGAAAATGGCGGAGTGTACCAGTTACCCTCTTGAGGTAGAGCTTTTGATAACACTTGGATCGATACATCCATGGTTGATCAAAACAGCAACAGCATGTGCAGAGAAGTTTTTTGCCGAAGATGAATTGAAGAGGCTAGACGGAATCAAATTTGATTTAAGAAAAGGTTCGAAAATAAGATTTGTTCTGAGCCTAATCTCACGTGTAGTGAAAAATGAAAAGGTTCTTATCTTCTGTCACCACCTTGCACCTGTGAGATTTTTAATAGAGTTATTTGAGAAGTACTTTCAATGGAAAAATGGAAGAGAGGTTCTGCTACTTACTGGTGATCTAGATTTGTTTGAAAGAGGAAAAGTGATTGATAAGTTTGAAGATCCTCGCAGCGGTTCAAAGATACTTCTGGCTTCAATCAATGCTTGTGCTGAAGGTATCAGTTTAACAGCAGCTTCTAGAGTGATTTTTTTGGGTTCTGAATGGAATCCTTCAAAAACAAAGCAAGCTATTGCACGCGCTTTTCGCCCTGGTCAGCAAAAAATGGTTTATGTGCATCAGTTATTGACTACCAGGTCGATGGAGGAAGATAAGTATCGAAGAACTACTTGGAAAGAGTGGGTTTCTTGCATGATTTTTAGTGAGGAGTTTGTGGAAGATCCTTCTAAATGGCAAGCAGAAAAGATTGAAGATGAAATACTTAGGGAGATGGTTGAAGAGGATAAGTCTAAAGCTATTCATATGATTATGAAGAATGAAAAGGATTCTGTAACGAATATGCCGCGTCATACAGAAGGACAGCAAGGCCTTCTAGAAGGATCAGATTTGGTTACGCAAGAGCCACAATCTGTTAGGCACTAG 2883 0.3923 MPSNQIEGLRRSKRRNVQPKRYIGSSVEKLEVGTFRTRPYKRGAYVIEEYDGKSGEKVGDAAGEIPSKYLSKKNGVAVGVLTLEPCNMTTISSDVEVDDNVTLGHYYSFCKEKPARRRIHGSDDMDFETKWEGIRFKKGAQTKRYHSICLTNRSHVQEEGGRTLNADAHKEVIDTYMKNLDSLPAEEEPTINEETNKLEHKEEEKVSKSDDEEENPDDLSAIWEDMDTAMAASCLLDGTEGSNEEVLADTEEICEHDYVLNEEIGIFCRNCGSVKTEIRDITELVVERQKWHKEEKLYSGEDNDEQKSEAKVDEDDNNDMFSTHATDPDEPISAEKDNVWELIPELKEKMHAHQKKDFQFLWQNIAGSMEPSLMQERSETSGGCVISHAPGAGKTFLVISFLVSYLKIFPGKRPLVLAPKSTLYPWCKEFKKWKVPVPVYLIHGRQNQRDSMTPKPKVLPGVPRPSGDVKHVLDCLGKIQKWHSHPSVLVMGYTSFLALMRQDTKFAHRKFMAKTLKESPGILILDEGHNPRSTKSRLRKCLMELPTELRILLSGTLFQNNFCEYFNTLCLARPKFVHEVIRELDSKYLRRGNKEKKAQHFLEARARKFFLNNIATKINSDNDEQKMQGLHVLRKITSSFIDVYESGNSSDTLPGLQIYTLLMNTSDEQHAILQKLQKKMAECTSYPLEVELLITLGSIHPWLIKTATACAEKFFAEDELKRLDGIKFDLRKGSKIRFVLSLISRVVKNEKVLIFCHHLAPVRFLIELFEKYFQWKNGREVLLLTGDLDLFERGKVIDKFEDPRSGSKILLASINACAEGISLTAASRVIFLGSEWNPSKTKQAIARAFRPGQQKMVYVHQLLTTRSMEEDKYRRTTWKEWVSCMIFSEEFVEDPSKWQAEKIEDEILREMVEEDKSKAIHMIMKNEKDSVTNMPRHTEGQQGLLEGSDLVTQEPQSVRH 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00672 960 MobiDBLite consensus disorder prediction 1 20 - -
Mepo3g00672 960 SMART helicmild6 767 852 IPR001650 -
Mepo3g00672 960 MobiDBLite consensus disorder prediction 928 960 - -
Mepo3g00672 960 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 336 577 IPR027417 -
Mepo3g00672 960 CDD SF2_C_SNF 734 863 - -
Mepo3g00672 960 MobiDBLite consensus disorder prediction 935 960 - -
Mepo3g00672 960 Gene3D - 319 618 IPR038718 -
Mepo3g00672 960 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 738 923 IPR001650 -
Mepo3g00672 960 MobiDBLite consensus disorder prediction 296 332 - -
Mepo3g00672 960 Coils Coil 191 211 - -
Mepo3g00672 960 Pfam SNF2-related domain 362 646 IPR000330 GO:0005524|GO:0140658
Mepo3g00672 960 Gene3D - 654 942 IPR027417 -
Mepo3g00672 960 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 651 918 IPR027417 -
Mepo3g00672 960 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 375 575 IPR014001 -
Mepo3g00672 960 MobiDBLite consensus disorder prediction 181 216 - -
Mepo3g00672 960 Pfam Helicase conserved C-terminal domain 735 851 IPR001650 -
Mepo3g00672 960 SMART ultradead3 346 583 IPR014001 -
Mepo3g00672 960 MobiDBLite consensus disorder prediction 190 208 - -
Mepo3g00672 960 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 7 930 IPR044567 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00672 Mepo-Chr3 9199134 9202440 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g00672 749 870 RAD5 or RAD16-like Gene Family AT5G05130 34.959 8.71e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mepo3g00672 SNF2_N 7.1e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g00672 K10875 - gmx:100811703 1054.66