Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00551 ATGAAGAGGGGAAGAGAGGTTGATAGCATAACCATGGCAAATTGTTTGATGTTACTTTCTCGTGGAAGCGATCAATTTGAAGCCACATATTCATCTACTACTTCAAACAATCGTGTGTTTGAATGTAAAACATGCAATAGACAATTTCCTTCATTTCAAGCCCTCGGTGGTCATAGGGCAAGTCACAAGAAGCCAAGGTTGATGGGAGAAAATATTGATGGTCAATTGCTACATACACCCCCAAAGCCTAAAACACATGAGTGTTCTGTCTGTGGATTGGAGTTTGCAATAGGACAAGCTTTAGGTGGCCACATGAGGAGACATAGAGCTTCAAATATGAACGGAAATAACATGCACAATTCTAATAATACTATGAGTTGTAGCAGTGGTGGTGGTAGTAGTAGTCTTGATTCTTCACAAAAGATGAAAGCTAGAAACAAGAGAGTTTTGGTTTTGGATTTGGATTTGAATTTGACTCCCTTTGAGAATGATTTGGAGTTTCTGAAGATTGGAAAGGCAACTGCTAATTTGATTGATTATTTTCATTGA 549 0.3825 MKRGREVDSITMANCLMLLSRGSDQFEATYSSTTSNNRVFECKTCNRQFPSFQALGGHRASHKKPRLMGENIDGQLLHTPPKPKTHECSVCGLEFAIGQALGGHMRRHRASNMNGNNMHNSNNTMSCSSGGGSSSLDSSQKMKARNKRVLVLDLDLNLTPFENDLEFLKIGKATANLIDYFH 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00551 182 SMART c2h2final6 40 62 IPR013087 -
Mepo3g00551 182 SMART c2h2final6 86 108 IPR013087 -
Mepo3g00551 182 MobiDBLite consensus disorder prediction 116 141 - -
Mepo3g00551 182 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Mepo3g00551 182 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Mepo3g00551 182 PANTHER ZINC FINGER PROTEIN ZAT5 8 164 - -
Mepo3g00551 182 Gene3D Classic Zinc Finger 73 148 - -
Mepo3g00551 182 Gene3D Classic Zinc Finger 20 72 - -
Mepo3g00551 182 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 113 IPR013087 -
Mepo3g00551 182 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Mepo3g00551 182 Pfam C2H2-type zinc finger 86 110 - -
Mepo3g00551 182 Pfam C2H2-type zinc finger 39 65 - -
Mepo3g00551 182 SUPERFAMILY beta-beta-alpha zinc fingers 38 108 IPR036236 -
Mepo3g00551 182 MobiDBLite consensus disorder prediction 116 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00551 Mepo-Chr3 7829472 7830267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g00551 1 179 C2H2 Transcription Factor Family AT2G37430 42.246 1.71e-36 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo3g00551 zf-C2H2_6 4.9e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g00551 - - gmx:100500371 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g00551 3 7829472 7830267 Mepo3g00551 3 7829472 7830267 ECH