Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00546 ATGAACTACCTTCCTCCTCCTCCAATCCGAAACCCTAGTTTCTGCAGCTGCATCTCCCATTCTTCCATTTTCAAGGAACTTGCAAGATTTTCAATGGCTCCTCCGAAGGGGGAAAATGCAAAAAAAGCTGATCCCAAAGCTCAGGCCTTGAAGACTGCCAAGGCTGTGAAATCTGGTCAAGCAATTAAGAAGAAAACTAAGAAGATCAGAACAACTGTCACATTCCACCGGCCAAAGACATTGTCGAGGGAAAGGAACCCTAAGTATCCTCGCATTAGTGCAACACCAAGAAACAAGTTGGACCATTATCAAATTCTTAAATTTCCTCTAACTACCGAGTCTGCAATGAAGAAAATCGAAGATAACAACACACTTGTTTTTATTGTCGACCTCCGTGCTGACAAAAAGAAAATTAAAGATGCTGTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACTTTGATCAGGCCTGATGGTACGAAGAAAGCCTATGTTCGGTTGACTCCAGATTATGATGCATTGGATGTTGCCAACAAAATTGGTATCATCTAA 558 0.414 MNYLPPPPIRNPSFCSCISHSSIFKELARFSMAPPKGENAKKADPKAQALKTAKAVKSGQAIKKKTKKIRTTVTFHRPKTLSRERNPKYPRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00546 185 Pfam Ribosomal protein L23 105 167 IPR013025 GO:0003735|GO:0005840|GO:0006412
Mepo3g00546 185 PANTHER 60S RIBOSOMAL PROTEIN L23A 39 185 IPR013025 GO:0003735|GO:0005840|GO:0006412
Mepo3g00546 185 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 102 178 IPR012678 GO:0003735|GO:0005840|GO:0006412
Mepo3g00546 185 FunFam 60S ribosomal protein L23a 64 185 - -
Mepo3g00546 185 NCBIfam 50S ribosomal protein L23 109 185 IPR019985 GO:0003735|GO:0005840|GO:0006412
Mepo3g00546 185 Pfam Ribosomal protein L23, N-terminal domain 46 94 IPR005633 -
Mepo3g00546 185 Hamap 50S ribosomal protein L23 [rplW]. 105 185 IPR013025 GO:0003735|GO:0005840|GO:0006412
Mepo3g00546 185 ProSitePatterns Ribosomal protein L23 signature. 163 178 IPR001014 GO:0019843
Mepo3g00546 185 Gene3D - 66 185 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00546 Mepo-Chr3 7756979 7760202 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g00546 32 185 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 87.013 9.91e-69 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g00546 K02893 - gmx:100777933 272.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g00546 3 7756979 7760202 Mepo3g00546 3 7756979 7760202 ECH