Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00540 ATGACTAGAATCAGAAAAAAGAAGATCACATCCAAATTGATTGAGAATAAAACTCGTAGAAAGGCGTGCTATAAGAAAAGATTGAAAGGGTTGTTCACCAAAATGGAGCAGGTGACAATCTTATGTGGCATTGAGGCATGTGCGGTTGTGTTTGGGCCAGGTGATACAAAACCATCAATATGGCCATCTCATACGGTGGCTGAAGACCTAATAACCAAGTTTGAGTCAATGTCATTGGATGTACAATCGAAAAATAAGACTGACCAATTGACTTTTTTGGAGGATAAGGGCAAAAAACTTGAAGCAAGCCTTGCAAAGATCGATAAAGAAAATGAAGAGACTTTAATGGGAGCTTATATGCATCAAATTGAAAACGAAGGTAAGTCTTTAGATGATTTTGATCATGATGTGCTGAATCGCTTGATTGCTTTTACTCTTGAAAAAATTAAGATCACTAGAAAGAGGTCTAGGCATTTTGAAAAGGAGATCTTGCCTCTTAATAATCCTCCTCCATCATTGGCACCAATATCTTTTACTTTAGACAATGGTGATGGGGTTCATTCTGGGGTTAACATGTACGCACATGTTTTGAACCAACAACCCTGGTTAGATTTGGTCGAGAAAGTTGATCAAATGAGCAGTGGTTTTAATAACAACCTTGGAAGTAGCATGGGGATACCTCCACCTACAGATCTTAGTGGTGGTGGTTGTGATAACTTGGCTAATCAAGCCGGTTTTGGAGATTATGATAACAACTTTGATAACGGCATGGGAATACCATCACCTGAAAATTCTAGTGCTGGTTTTGATGCAGCGTTTTTTCAAGACAATTTGCAAGATTTTGATAGTATCATGGAGATATCATCACATGAAAATCATAGTGGTAGTGTTCATGATATGTTTCTTCCTCGAGGAAATCTGGGGCATTTTATTAACAATATAGGTAGCAATATTGGGATACAATCACATGAAAATCCTAGTGGTAGTGTAGGTATGTTGCCTCCTGAAGGATATTTTGGAGGTCAAAGCAACTTTCAAGGTTTTGATGACATTACACGTAGCAACACAAGGATACTACCACATGCAAATCTGAATGGGAATGTTGATTTGTTGCCTCCTCAAGAAAATTTTGAAGATCAAGAAAACTTTGGAGGTTTTGATGACAACATAGGTAGCAGCATGTGGATACAACATGCAAATTCGAGTGGTGGTGATACATTGCTTCCTCAAGAAAATTTAGGAGACCAATTTAACTTTGAAGATTTTGATAACAACACAGGTAGCAACATGTTGATACCACCACATACAAATCCTGGTGTTGGTAATGTTGATGTGTTGTCTCATCAAGGAAATTTTGAAGTTCAAGGAAACTTTGGAGGTTTTGAGGATGATACCTGTAGCAACATGTGGAAACCTCCACATGAAAATCCAAGCAATGGTGGTGTTGATATGATGACTTTTCATCAAAACAACTTTGGCGGCAATATTAATGGAGATGGGATGCAGAGTTTTAATGTGAACTTTGTTGACAATAATTACAGGAGCAACTTCAACCCTGGATTTCCTTCGGAATAA 1575 0.379 MTRIRKKKITSKLIENKTRRKACYKKRLKGLFTKMEQVTILCGIEACAVVFGPGDTKPSIWPSHTVAEDLITKFESMSLDVQSKNKTDQLTFLEDKGKKLEASLAKIDKENEETLMGAYMHQIENEGKSLDDFDHDVLNRLIAFTLEKIKITRKRSRHFEKEILPLNNPPPSLAPISFTLDNGDGVHSGVNMYAHVLNQQPWLDLVEKVDQMSSGFNNNLGSSMGIPPPTDLSGGGCDNLANQAGFGDYDNNFDNGMGIPSPENSSAGFDAAFFQDNLQDFDSIMEISSHENHSGSVHDMFLPRGNLGHFINNIGSNIGIQSHENPSGSVGMLPPEGYFGGQSNFQGFDDITRSNTRILPHANLNGNVDLLPPQENFEDQENFGGFDDNIGSSMWIQHANSSGGDTLLPQENLGDQFNFEDFDNNTGSNMLIPPHTNPGVGNVDVLSHQGNFEVQGNFGGFEDDTCSNMWKPPHENPSNGGVDMMTFHQNNFGGNINGDGMQSFNVNFVDNNYRSNFNPGFPSE 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00540 524 Coils Coil 90 113 - -
Mepo3g00540 524 PANTHER MADS BOX PROTEIN 7 125 - -
Mepo3g00540 524 CDD MADS_SRF_like 6 88 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mepo3g00540 524 SMART madsneu2 4 63 IPR002100 GO:0003677|GO:0046983
Mepo3g00540 524 Gene3D - 16 99 IPR036879 GO:0003677|GO:0046983
Mepo3g00540 524 SUPERFAMILY SRF-like 6 96 IPR036879 GO:0003677|GO:0046983
Mepo3g00540 524 ProSiteProfiles MADS-box domain profile. 4 52 IPR002100 GO:0003677|GO:0046983
Mepo3g00540 524 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 14 54 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00540 Mepo-Chr3 7688651 7690225 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g00540 6 120 Type I MADS-box Gene Family AT1G65300 37.391 4.18e-21 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo3g00540 SRF-TF 3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g00540 - - mtr:25491525 893.264