Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00512 ATGTGCAACACCAATGAGAACAAGGGGAAGGAGAAGGTGAATGAAGAATCAATATCCAATTTGAAGATGATGGAGAATCAGAACAATGTGAACAAGCGAAAGGCCATCGTAATGGAAGAATCCCATGTTGAAACTAAGAATTCAAAGTCTCCCCAAAAAGATATTGCTGAAGAAGAATCAATTGATTCTCCCAAAGAAATTCCTCCATTTCTTCTTTTTGGATTCATTGTTGATAAGAGGAAAGGAATTCAAAATGCTTACTCATGCAAATTTTGTAGCAGAAAGTTCACCACTCCACATGCATTAGGTGGCCATCAAAGTTCTCACAAATTTGAGAGAAGTCTGGTCAAAAAAAGGAACCAAGCTTTTACCGAAGCTTGGATAAATTACTCAAATGGTAATCAAGGGATAAGTCTAAACAGTGTCACTCCTTTCCATATGGGGTGTGGATATCAATGTTATGGAATTAACAATATGATTCAGCATGCAGGGTCATCAAACTTTTATGCAGGAAATTTGTTTGGTGCATTGCCGCATATTCCACATATAGATGAAGTGAATGAGGCTTATCAAGGCATTGTGAGTCATAAAGTTAATATGACTGAGATTGAATTTGGTTCAATTTCAGAGGGAGATGTTGTGGGTGACGAAGTTGACCAGGAAGACAATGAGACTCAAGGGGAAGAATCATCCAAGATTGATTTGACCCTTAAGCTTTGA 720 0.3778 MCNTNENKGKEKVNEESISNLKMMENQNNVNKRKAIVMEESHVETKNSKSPQKDIAEEESIDSPKEIPPFLLFGFIVDKRKGIQNAYSCKFCSRKFTTPHALGGHQSSHKFERSLVKKRNQAFTEAWINYSNGNQGISLNSVTPFHMGCGYQCYGINNMIQHAGSSNFYAGNLFGALPHIPHIDEVNEAYQGIVSHKVNMTEIEFGSISEGDVVGDEVDQEDNETQGEESSKIDLTLKL 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00512 239 MobiDBLite consensus disorder prediction 35 61 - -
Mepo3g00512 239 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Mepo3g00512 239 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 7 239 IPR044246 GO:0009788
Mepo3g00512 239 MobiDBLite consensus disorder prediction 211 239 - -
Mepo3g00512 239 MobiDBLite consensus disorder prediction 19 34 - -
Mepo3g00512 239 MobiDBLite consensus disorder prediction 1 61 - -
Mepo3g00512 239 Gene3D Classic Zinc Finger 74 134 - -
Mepo3g00512 239 MobiDBLite consensus disorder prediction 225 239 - -
Mepo3g00512 239 SUPERFAMILY beta-beta-alpha zinc fingers 85 114 IPR036236 -
Mepo3g00512 239 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 114 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00512 Mepo-Chr3 7291392 7292111 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g00512 85 170 C2H2 Transcription Factor Family AT5G57520 34.091 9.87e-10 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo3g00512 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g00512 - - mtr:120577076 360.533