Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00482 ATGGCGCTTCCTCCACAACCCGAATCCAACAATGGAGGAATTGTCGCCAACGCCACCGAAGAAACCGATGGAACTCCCATTCGATACCTTCCTCTCGATCATCTCTACTCCGCTACATCACCTTGTAGCGGTTCATCCAATGTCATGTCCAAAAAAGTTAAAGCTCGAAAACTCACCAACAGCAACAACGAAGACAACGAGATTCAGTTCAGTAATGGTGAAATCGATGATTCACCGATTGAAATTGAAAAAACTATGTCGAAGATGACGTTGTTTTCTGTGGAGGATTTTCCTAAACCGCCGCTTTTGTTTGTTTACACACGCCGGCGACGGAAGAGAAGTTCAATTGAGTCTGATTGTGAGAGGACGGTGTTGAAGAGGAGGAGAATTGGGAGTAATGAGTTGGAGAGATTAGGGATTGATTTGAATTTGATTGGGAAAATTGATGATGGACCTGGATTGAGAAAATGTCGAAATCAAATTGGGAATTTTTCTGAGAATTGTGATTCTGTTGCTAAGAATTCAAAGTTGGTGCCTGAATCTTACACATTGAAGAGATGGGTCGCGTTGAGTTTTGATGATGCCAATCCGGAGGCTTTTGTTGGATTGAAATGCAAGGTTCACTGGCCCATGGATTTAAAATCATACACTGGCCTTGTCAAAAGTTACGACAGGGAAGCTAAGATACATCATATCGAGTATGATGATGGAGAAGAGGAAAATTTAATTCTTTCAAATGAAAATGTAAAATACCATGTTTCCCGTAACGACATGGAATGTTTAAAATTGAGTTACGCCAAAGTTCATGACAATAATGTCTCTGATTATAATGTTGAAGAGATGCTCGCATTGGCTGCAAGTATGAATGATTGTCAAGACTTTGAGCCCGGGGATATAGTATGGGCCAAGCTTACAGGTTATGCTATGTGGCCAGCAGTTGTTCTGGATGAATCACTTGCTAGCAGCTGTAAGGGTTTAAAAACGTTCGTAGGGGGGAGATCAGTTCCTGTCCAATTTTTTGGCACCCATGACTTTGCAAGAGTTCGAGTGCAACAGGTGAAATCTTTTCTCAGTGGACTTCTAACAGATCTACACTCAAAGTGCAAGAAACCGAGTTTCATTGAAGGTTTAGAAGAGGCAAAAAGGTATCTAAGCGCACAGAAGCTTCCTTTGGAGATGATAGAGTTGAGGAAAAGATATGACTGTAGCAATGTAAGTGGAGAGGATGGAGGTTCAGATTTGGGTGAAGACTATGTAAGTGACAAAGGGACTTGGGCAGCACTTCAAAAGATCGACACCTTTCCTTATGAAGTGGGAGACTTGCAAATTCTAAGCCTTGGAAAGGTAGTTGGAGATTCTACAGCTTTCCGGGATGGAAGATCCATCTGGCCTGAAGGGTACACAGCAGTGAGGAAGTTCACTTCAGTTACTGACCCTGAAGTATCTGTCCCTTATAAGATGGAGGTTTTGAGAGATCCAGAATCCAGATTCAGACCCCTATTTAGAGTGACAGTTGATGGTGGTGAGCAGTTCAATGGATATAAACCGTCTACTTGCTGGAATCAAGTATACGAAAGGATAAAGAAATTGAAAAAGGCTGTTTCTGAAGGTTCTGTTGTTGACAGCGCGGTAGAAAGTGGCTATGAATCCGGCTCTGATATGTTTGGTTTCTCCAATCCTGACGTGGCTAAACTGATAAAGGGATTATCTAAATCCAAAGTCTCTTTGAAGAAATCAATTTGCAAGTCAGGTTCCAGATTACCTGTTGGTTATAGGCAGGTTCATATTAATTGGTTTGATCTCGATAAGTGCAATGTGTGCCATATGGATGAGGAGTACGAGAACAATCTCTTTCTGCAGTGCGACAAATGCAGAATGATGGTCCATGCTAGATGCTATGGAGAACATGAACCTGTTAATGGAGTGCTATGGTTATGCAACTTATGTCGCTCGGGTGCTCCTCCCCCACCTTGTTGCTTATGTCCACTCATAGGTGGTGCAATGAAGCCTACAACGGATGGCCGATGGGCTCATTTGGCTTGTGCCATGTGGATACCTGAAACTTGCTTAGCTGATGTCAAGAGAATGGAGCCTATTGATGGTTTGAGGAGAATCAGTAAGGACCGTTGGAAGTTGTTATGCAGCATATGTGGTGTATCTTATGGTGCTTGCATCCAATGTTCAAACAATTCTTGTCGAGTAGCATATCATCCACTCTGTGCACGTGCAGCTGGTCTTTGTGTTGAGCTTGAGAACGAGGACAGGCTCTACCTACTTTCCGTAGATGACGATGAGGATCAGTGCATTCGCTTACTTTCTTTCTGCAAGAAACATAGGCAGCCATCTCATGATCATTCTGTTGCCGATGAACGTGTCCAGGTTATTGGTCAATGTTCAGACTATGAACCACCACCCAATCCATCTGGGTGTGCCCGAAGTGAACCATATGATTACTTTGGTAGGAGAGGCCGAAAAGAACCTGAAGCACTTGCAGCTTCATCGCTTAAACGTTTATTTGTGGAGAATCAACCTTACTTAGTTGGTGGATACTGCCAACATGGATTGTTGAACGACCCAGAGCCTTCTGGCAGAGGAGTCTGCTCAAAATTCTTTTGTAGTGAACAACGGCTGAGAACCTCTATGGTTGATGCTGGAGACAGCATACTTACTGTTGCGGAGAAATATAAGTACATGAGGGAAACCTTTCGGAAACAGTTGGCGTTTGGGAAATCAAGAATTCATGGATTTGGTATCTTTGCAAAGCATCCATATAAAGGTGGAGACATGGTGATTGAATACACTGGTGAACTTGTTAGACCTCCTATAGCTGACCGGAGAGAGCGTTTTATATACAATTCTTTGGTGGGTGCTGGAACATATATGTTTCGGATTGATGATGAACGAGTCATTGATGCTACTAGAGCAGGAAGCATTGCTCATTTAATTAATCATTCCTGTGCACCAAATTGCTATTCAAGAGTCATTAGTGTTAACGGCGATGAGCATATTATAATATTTGCCAAGAGGGACATTAAACAATGGGAAGAGCTCACATATGATTATAGATTTTTCTCAATAGATGAGCGGCTTTCTTGTTACTGTGGCTTCCCAAAATGTCGAGGTGTAGTAAATGATACTGAGGCAGAAGAGCGAGCTGGTACCCGATATGCACCACGAAGCGAATTAGTAGATTGGAGAGGAGAATGA 3207 0.4269 MALPPQPESNNGGIVANATEETDGTPIRYLPLDHLYSATSPCSGSSNVMSKKVKARKLTNSNNEDNEIQFSNGEIDDSPIEIEKTMSKMTLFSVEDFPKPPLLFVYTRRRRKRSSIESDCERTVLKRRRIGSNELERLGIDLNLIGKIDDGPGLRKCRNQIGNFSENCDSVAKNSKLVPESYTLKRWVALSFDDANPEAFVGLKCKVHWPMDLKSYTGLVKSYDREAKIHHIEYDDGEEENLILSNENVKYHVSRNDMECLKLSYAKVHDNNVSDYNVEEMLALAASMNDCQDFEPGDIVWAKLTGYAMWPAVVLDESLASSCKGLKTFVGGRSVPVQFFGTHDFARVRVQQVKSFLSGLLTDLHSKCKKPSFIEGLEEAKRYLSAQKLPLEMIELRKRYDCSNVSGEDGGSDLGEDYVSDKGTWAALQKIDTFPYEVGDLQILSLGKVVGDSTAFRDGRSIWPEGYTAVRKFTSVTDPEVSVPYKMEVLRDPESRFRPLFRVTVDGGEQFNGYKPSTCWNQVYERIKKLKKAVSEGSVVDSAVESGYESGSDMFGFSNPDVAKLIKGLSKSKVSLKKSICKSGSRLPVGYRQVHINWFDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGEHEPVNGVLWLCNLCRSGAPPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKRMEPIDGLRRISKDRWKLLCSICGVSYGACIQCSNNSCRVAYHPLCARAAGLCVELENEDRLYLLSVDDDEDQCIRLLSFCKKHRQPSHDHSVADERVQVIGQCSDYEPPPNPSGCARSEPYDYFGRRGRKEPEALAASSLKRLFVENQPYLVGGYCQHGLLNDPEPSGRGVCSKFFCSEQRLRTSMVDAGDSILTVAEKYKYMRETFRKQLAFGKSRIHGFGIFAKHPYKGGDMVIEYTGELVRPPIADRRERFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCAPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDERLSCYCGFPKCRGVVNDTEAEERAGTRYAPRSELVDWRGE 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00482 1068 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 650 781 IPR013083 -
Mepo3g00482 1068 Pfam PHD-zinc-finger like domain 657 778 - -
Mepo3g00482 1068 MobiDBLite consensus disorder prediction 1 20 - -
Mepo3g00482 1068 Gene3D - 284 394 - -
Mepo3g00482 1068 ProSiteProfiles Post-SET domain profile. 1028 1044 IPR003616 -
Mepo3g00482 1068 SUPERFAMILY SET domain 902 1041 IPR046341 -
Mepo3g00482 1068 SMART set_7 904 1028 IPR001214 GO:0005515
Mepo3g00482 1068 CDD PHD_ATX1_2_like 603 649 IPR042010 -
Mepo3g00482 1068 SMART PWWP_4 294 357 IPR000313 -
Mepo3g00482 1068 PANTHER PHD FINGER PROTEINS 44 1050 - -
Mepo3g00482 1068 ProSiteProfiles Zinc finger PHD-type profile. 601 652 IPR019787 -
Mepo3g00482 1068 ProSiteProfiles FYR domain FYRC motif profile. 496 582 IPR003889 GO:0005634
Mepo3g00482 1068 Pfam SET domain 915 1021 IPR001214 GO:0005515
Mepo3g00482 1068 Pfam F/Y-rich N-terminus 439 489 IPR003888 GO:0005634
Mepo3g00482 1068 ProSiteProfiles Extended PHD (ePHD) domain profile. 655 779 IPR034732 -
Mepo3g00482 1068 SMART fyrc_3 500 584 IPR003889 GO:0005634
Mepo3g00482 1068 Gene3D - 434 574 - -
Mepo3g00482 1068 ProSiteProfiles FYR domain FYRN motif profile. 433 492 IPR003888 GO:0005634
Mepo3g00482 1068 CDD ePHD_ATX1_2_like 664 778 IPR041956 -
Mepo3g00482 1068 CDD SET_SETD1-like 891 1040 - -
Mepo3g00482 1068 Pfam PHD-finger 616 650 - -
Mepo3g00482 1068 ProSitePatterns Zinc finger PHD-type signature. 604 649 IPR019786 -
Mepo3g00482 1068 SUPERFAMILY FYVE/PHD zinc finger 596 665 IPR011011 -
Mepo3g00482 1068 SUPERFAMILY FYVE/PHD zinc finger 704 743 IPR011011 -
Mepo3g00482 1068 SUPERFAMILY Tudor/PWWP/MBT 289 389 - -
Mepo3g00482 1068 Pfam F/Y rich C-terminus 498 571 IPR003889 GO:0005634
Mepo3g00482 1068 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 595 649 IPR013083 -
Mepo3g00482 1068 SMART fyrn_3 448 492 IPR003888 GO:0005634
Mepo3g00482 1068 Pfam PWWP domain 297 384 IPR000313 -
Mepo3g00482 1068 FunFam Histone-lysine N-methyltransferase 653 781 - -
Mepo3g00482 1068 CDD Tudor_Agenet_AtEML-like 201 251 - -
Mepo3g00482 1068 ProSiteProfiles PWWP domain profile. 296 359 IPR000313 -
Mepo3g00482 1068 ProSiteProfiles SET domain profile. 904 1022 IPR001214 GO:0005515
Mepo3g00482 1068 CDD PWWP_AtATX1-like 295 390 - -
Mepo3g00482 1068 FunFam Histone-lysine N-methyltransferase 837 1061 - -
Mepo3g00482 1068 Gene3D - 198 251 - -
Mepo3g00482 1068 SMART PHD_3 713 779 IPR001965 -
Mepo3g00482 1068 SMART PHD_3 603 650 IPR001965 -
Mepo3g00482 1068 Gene3D SET domain 866 1058 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00482 Mepo-Chr3 6882262 6895976 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g00482 604 749 C2H2 Transcription Factor Family AT3G14740 40.523 1.06e-26 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mepo3g00482 zf-HC5HC2H_2 4.4e-33 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g00482 - - gmx:100806736 1716.05