LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo3g00472	ATGGCCCCACAACCTGCATGTGGTGTGTGTGATGTTGACAAAGGAAGGTGTGAGAGTGGGAAGGAAACAAAGCAAGTTGCATATATACATGAGGGGACGGTCATAGCATGCGAGCAGTCTGCAAATGACACTGATTTGTCTACCATGGTTTCTGCTCTCTCTCAAGTCATTGGAACATCATCTACCAATCATAATAACCCACACATGGCACAATCAACCTCAATTACTATGGTCAATGAAGAATCTCAACCACCTCAACCTCTTCTAGATCAAGAGGTAAAAAAGAAACCGCACTATAGAGGAGTGAGACAGAGACCATGGGGAAAATGGGCAGCTGAAATACGTGACCCAAAAAAAGCAGCTAGAGTTTGGTTAGGAACATTTGATACAGCTGAAGATGCAGCTCTTGCATATGACAAAGCTGCACTTAAATTCAAAGGCACAAAAGCTAAACTTAATTTCCCTGAAAGAGTTACTCAATGCAACAGTTCTAGTGCTTATAATGCAATTCAACAAAGTGGTTATGTTTCTAATTCTCATGATCAACAAGTTTTCCCAAACTTGTTTCAGTATGCTCAGATTCTTTCTAGTGATGCTGAATTCCCTTATTATGCTTCTCATCTTTTCAATCAACAACAAGAAGGAGATCGTCACCCACCAGGCGAGTAG	669	0.4111	MAPQPACGVCDVDKGRCESGKETKQVAYIHEGTVIACEQSANDTDLSTMVSALSQVIGTSSTNHNNPHMAQSTSITMVNEESQPPQPLLDQEVKKKPHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEDAALAYDKAALKFKGTKAKLNFPERVTQCNSSSAYNAIQQSGYVSNSHDQQVFPNLFQYAQILSSDAEFPYYASHLFNQQQEGDRHPPGE	222

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo3g00472	222	PANTHER	DNA-BINDING DOMAIN	67	179	IPR044808	GO:0003700\|GO:0009873
	Mepo3g00472	222	Gene3D	AP2/ERF domain	98	157	IPR036955	GO:0003700\|GO:0006355
	Mepo3g00472	222	FunFam	Ethylene-responsive transcription factor 2	97	156	-	-
	Mepo3g00472	222	MobiDBLite	consensus disorder prediction	78	100	-	-
	Mepo3g00472	222	CDD	AP2	97	156	IPR001471	GO:0003700\|GO:0006355
	Mepo3g00472	222	Pfam	AP2 domain	97	147	IPR001471	GO:0003700\|GO:0006355
	Mepo3g00472	222	PRINTS	Ethylene responsive element binding protein signature	121	137	IPR001471	GO:0003700\|GO:0006355
	Mepo3g00472	222	PRINTS	Ethylene responsive element binding protein signature	99	110	IPR001471	GO:0003700\|GO:0006355
	Mepo3g00472	222	ProSiteProfiles	AP2/ERF domain profile.	98	155	IPR001471	GO:0003700\|GO:0006355
	Mepo3g00472	222	SMART	rav1_2	98	161	IPR001471	GO:0003700\|GO:0006355
	Mepo3g00472	222	SUPERFAMILY	DNA-binding domain	98	156	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo3g00472	Mepo-Chr3	6631803	6640734	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo3g00472	49	209	AP2-EREBP Transcription Factor Family	AT5G13330	51.124	2.28e-45	148

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Mepo3g00472		AP2	9e-16	CL0081