Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00469 ATGCAATTCGCTAAGCTTGATGATTCTCCTATGTTCCGCAAACAGATACAGGGCATGGAGGAAAGTGCCGAATCTTTGAGAGAGAGAAGTTTGAAATTTTACAAGGGATGCAGAAAATACACGGAAGGACTTGGAGAGGCATATGATGGAGACATTGCATTTGCAAGTGCCCTAGAAACTTTTGGTGGGGGCCATAATGACCCCATCAGTGTAGCTTTTGGAGGCCCTGTTATGACCAAATTCACTATAGCCTTAAGAGAAATCGGGACATACAAGGAGGTCCTTCGATCACAGGTTGAACATATGTTAAATGACAGATTGCTCCAGTTTGTCAATATTGATTTGCAAGAGGTCAAGGAAGCACGAAAACGCTTTGACAAAGCCAGCCTTATCTATGACCAGACTCGTGAAAAGTTTCTTTCACTGAGAAAAGGTACAAAAAGTGATGTAGCTACTGCCCTAGAAGAGGAGCTTCATAGTGCAAGAACTACATTTGAGCAAACTCGATTTAATCTGGTTACTGCTCTGTCAAATGTTGAAGCAAAGAAGAGATTTGAGTTTTTAGAAGCAGTCAGTGGGACTATGGATGCACATCTTCGTTACTTCAAACAGGGGTATGAACTATTACATCAAATGGAGCCGTACATTAACCAGGTCTTGACTTATGCTCAGCAATCAAGAGAAAGGTCCAATTATGAGCAAGCAGCTCTCAATGAAAGAATGCAAGATTATAAACGGCAGATTGATCGAGAAAGTAGGTGGGCTTCTAATGGTTCTAATGGATCTCCTAATGGAGATGGTATACAAGCCATTGGTAGAAGTTCACATAAGATGATAGAAGCAGTAATGCAAAATGCTGCAAAGGGAAAGGTTCAGACTATTCGACAAGGTTATCTCTCCAAGCGTTCCTCAAACTTAAGGGGGGACTGGAAAAGGAGATTTTTCGTTCTTGATAGCAGGGGAATGCTGTATTACTACCGAAAACAATGCAGCAAACCATCTGGCTCTAGCAGTCAACATTCTGGTCAGAGGAATAGTTCGGAGCTTGGTTCTGGGCTTCTAAGTCGATGGCTGTCCTCTCATCATCATCATCATGGTGGAGTGCATGATGAGAAATCCGTTGCTCATCACACTGTGAACCTGCTTACATCAACAATCAAAGTTGATGCTGACCAATCAGATTTGAGGTTTTGCTTCCGCATCATTTCCCCAACAAAGAACTACACTTTGCAGGCAGAGAGTGCGCTGGACCAAATGGATTGGATTGAAAAAATCACAGGTGTTATTGCCTCATTGCTGAGTTCTCAGATTCCCGAAAGGTTGTTGCCGGCAAGTCCAATGGGAAGTGGTCATCTCAGGTCTACCAGTGAGAGTAGTTCTTTTGAAAGTTCAGATTTTGATCACTGTGCTGTTGAAGAAAGTGCAGCTGATAGATGTTTTGTGTCTTCACATCTGGAGCGTGCGTCCAGAAATTTGAACCAGCAGCGATCCTGTAATAAAAGTGAAAAACCAATTGAAGTGTTGCGAAGAGTTATTGGGAATGATAAATGTGCTGATTGCGGGGCAACTGAACCGGATTGGGCATCACTAAATCTTGGCGTTCTTGTTTGCATTGAATGTTCCGGTGTTCATCGAAACCTTGGTGTGCACATATCAAAGGTTCGCTCTCTTACATTGGACGTTAAGGTGTGGGAACCTTCTGTGATAACTTTATTTCAGTCTCTTGGGAATACTTTTGCCAACTCTGTCTGGGAGGAACTTTTGCAATCAAGAAGTGCCTTTCAGCTCGAGCAAGTCCGATAA 1803 0.4276 MQFAKLDDSPMFRKQIQGMEESAESLRERSLKFYKGCRKYTEGLGEAYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQFVNIDLQEVKEARKRFDKASLIYDQTREKFLSLRKGTKSDVATALEEELHSARTTFEQTRFNLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQDYKRQIDRESRWASNGSNGSPNGDGIQAIGRSSHKMIEAVMQNAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKPSGSSSQHSGQRNSSELGSGLLSRWLSSHHHHHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQIPERLLPASPMGSGHLRSTSESSSFESSDFDHCAVEESAADRCFVSSHLERASRNLNQQRSCNKSEKPIEVLRRVIGNDKCADCGATEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNTFANSVWEELLQSRSAFQLEQVR 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00469 600 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 484 600 - -
Mepo3g00469 600 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Mepo3g00469 600 Pfam Putative GTPase activating protein for Arf 505 591 IPR001164 GO:0005096
Mepo3g00469 600 MobiDBLite consensus disorder prediction 253 269 - -
Mepo3g00469 600 MobiDBLite consensus disorder prediction 249 270 - -
Mepo3g00469 600 CDD ArfGap 505 588 - -
Mepo3g00469 600 Coils Coil 227 247 - -
Mepo3g00469 600 Gene3D Arf GTPase activating protein 487 598 IPR038508 -
Mepo3g00469 600 SMART PH_update 293 432 IPR001849 -
Mepo3g00469 600 Pfam PH domain 294 429 IPR001849 -
Mepo3g00469 600 Gene3D - 285 440 IPR011993 -
Mepo3g00469 600 CDD PH_ACAP 295 434 - -
Mepo3g00469 600 PRINTS HIV Rev interacting protein signature 533 550 IPR001164 GO:0005096
Mepo3g00469 600 PRINTS HIV Rev interacting protein signature 556 577 IPR001164 GO:0005096
Mepo3g00469 600 PRINTS HIV Rev interacting protein signature 514 533 IPR001164 GO:0005096
Mepo3g00469 600 PANTHER CENTAURIN/ARF 3 592 IPR045258 GO:0005096
Mepo3g00469 600 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Mepo3g00469 600 ProSiteProfiles ARF GTPase-activating proteins domain profile. 502 585 IPR001164 GO:0005096
Mepo3g00469 600 ProSiteProfiles PH domain profile. 292 430 IPR001849 -
Mepo3g00469 600 FunFam ADP-ribosylation factor GTPase-activating protein AGD3 4 251 - -
Mepo3g00469 600 SUPERFAMILY ArfGap/RecO-like zinc finger 502 591 IPR037278 -
Mepo3g00469 600 SUPERFAMILY PH domain-like 293 446 - -
Mepo3g00469 600 SMART arf_gap_3 502 600 IPR001164 GO:0005096
Mepo3g00469 600 Pfam BAR domain of APPL family 6 233 IPR004148 GO:0005515|GO:0005737
Mepo3g00469 600 CDD BAR_SFC_plant 14 215 IPR035670 -
Mepo3g00469 600 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00469 Mepo-Chr3 6582391 6592898 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g00469 514 588 C2H2 Transcription Factor Family AT4G05330 52.632 8.48e-19 86.3