Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00417 ATGTTGGAGCAAGATTTCCTCACCACCACCTCAGCCACAGCCACCGTAAGGTCTGCGGCAACGTGGGCACGAACATGTGACACGTGCCGCTCGGCCCCATGCGCGGTTTTCTGCCGCGCAGACTCGGCATATTTATGTGCCGCGTGTGATGCACGCATCCACGCGGCAAACCGTGTAGCCTCGAGGCACGAACGCGTTTGGGTCTGTGAGGCCTGCGAGCGTGCCCCGGCGGCTTTTCTTTGTAAAGCTGATGCCGCTTCTCTTTGCTCTACTTGTGATGCTGATATCCACTCTGCTAACCCTCTTGCAAGCCGCCACCAACGTGTCCCGATTCTTCCAATTTCTGGTTACCTTTACGGTCCTCCGGCCACCCTTTTAGGTGCCGAAGATGAAGGCTTTGTCGGCGGCAGTTGCGGTGGCGGCTGTGAGGTGGAAGAAGAGGAGGATGAAGGTGTTGATCATGATATGGAGGACGAAAATGAAGCTGCTTCATGGCTTTTGTTGAATCCTCTAAAGAACAACAATAACAATAGTAACAACAATAACAACAACATTAGCAATGATCATAATCAAGTGGCTAATAATGGATTTTTGTTTAGTGGAGAGGTTGATGAGTATTTAGACCTTGTTGATTGTAATTCTTGTGGTGGTGATGAAAACACTTTCAATACCAATAATACTCATCATGATGAGTATAGTCAACAACAACAAGATCATTATGGTGTTCCTCAAAAAAGCTATGTTGGTGATAGTATTGTTCCTGTTCAACAACAGCAGGTACAGAATTTTCAACTTGGGTTGGAGTTTGAGTCTTCAAAAGCTGGATTCAGTTACAATGGTGGCTCTATTAGTCAAAGTGTTTCAGTTTCATCAATGGATGTTGGTGTTGTACCAGAATCAACCATGACCTATTCAAGACCTCCAAAAGGAACAATTGACCTATTTTCAGGTCCTTCTATTCAAATGTCTTCCCATTTCTCTCCAATGGATAGAGAAGCCAGAGTCCTAAGGTACAGAGAGAAAAAGAAGACAAGAAAATTTGAGAAAACAATTAGGTATGCTTCAAGGAAAGCCTATGCAGAAACTCGGCCGCGTATAAAAGGTCGATTCGCAAAGAGAACAGATGTAGAAGCTGAAGTTGATCAAATGTTTTCCACATCACTAATTACAGAAGTTGGATATGGAATTGTTCCCTCTTTCTGA 1203 0.4464 MLEQDFLTTTSATATVRSAATWARTCDTCRSAPCAVFCRADSAYLCAACDARIHAANRVASRHERVWVCEACERAPAAFLCKADAASLCSTCDADIHSANPLASRHQRVPILPISGYLYGPPATLLGAEDEGFVGGSCGGGCEVEEEEDEGVDHDMEDENEAASWLLLNPLKNNNNNSNNNNNNISNDHNQVANNGFLFSGEVDEYLDLVDCNSCGGDENTFNTNNTHHDEYSQQQQDHYGVPQKSYVGDSIVPVQQQQVQNFQLGLEFESSKAGFSYNGGSISQSVSVSSMDVGVVPESTMTYSRPPKGTIDLFSGPSIQMSSHFSPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTSLITEVGYGIVPSF 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00417 400 ProSiteProfiles Zinc finger B-box type profile. 64 111 IPR000315 GO:0008270
Mepo3g00417 400 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 26 387 IPR045281 GO:0009909
Mepo3g00417 400 CDD Bbox1_BBX-like 26 68 - -
Mepo3g00417 400 CDD Bbox1_BBX-like 68 111 - -
Mepo3g00417 400 ProSiteProfiles CCT domain profile. 331 373 IPR010402 GO:0005515
Mepo3g00417 400 Pfam B-box zinc finger 66 111 IPR000315 GO:0008270
Mepo3g00417 400 SMART bboxneu5 21 68 IPR000315 GO:0008270
Mepo3g00417 400 SMART bboxneu5 69 111 IPR000315 GO:0008270
Mepo3g00417 400 ProSiteProfiles Zinc finger B-box type profile. 21 68 IPR000315 GO:0008270
Mepo3g00417 400 Pfam CCT motif 331 373 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00417 Mepo-Chr3 5655140 5658641 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g00417 19 400 C2C2-CO-like Transcription Factor Family AT3G02380 54.523 3.52e-129 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Mepo3g00417 zf-B_box 1.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g00417 K12135 - tpra:123889374 597.045