LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo3g00417	ATGTTGGAGCAAGATTTCCTCACCACCACCTCAGCCACAGCCACCGTAAGGTCTGCGGCAACGTGGGCACGAACATGTGACACGTGCCGCTCGGCCCCATGCGCGGTTTTCTGCCGCGCAGACTCGGCATATTTATGTGCCGCGTGTGATGCACGCATCCACGCGGCAAACCGTGTAGCCTCGAGGCACGAACGCGTTTGGGTCTGTGAGGCCTGCGAGCGTGCCCCGGCGGCTTTTCTTTGTAAAGCTGATGCCGCTTCTCTTTGCTCTACTTGTGATGCTGATATCCACTCTGCTAACCCTCTTGCAAGCCGCCACCAACGTGTCCCGATTCTTCCAATTTCTGGTTACCTTTACGGTCCTCCGGCCACCCTTTTAGGTGCCGAAGATGAAGGCTTTGTCGGCGGCAGTTGCGGTGGCGGCTGTGAGGTGGAAGAAGAGGAGGATGAAGGTGTTGATCATGATATGGAGGACGAAAATGAAGCTGCTTCATGGCTTTTGTTGAATCCTCTAAAGAACAACAATAACAATAGTAACAACAATAACAACAACATTAGCAATGATCATAATCAAGTGGCTAATAATGGATTTTTGTTTAGTGGAGAGGTTGATGAGTATTTAGACCTTGTTGATTGTAATTCTTGTGGTGGTGATGAAAACACTTTCAATACCAATAATACTCATCATGATGAGTATAGTCAACAACAACAAGATCATTATGGTGTTCCTCAAAAAAGCTATGTTGGTGATAGTATTGTTCCTGTTCAACAACAGCAGGTACAGAATTTTCAACTTGGGTTGGAGTTTGAGTCTTCAAAAGCTGGATTCAGTTACAATGGTGGCTCTATTAGTCAAAGTGTTTCAGTTTCATCAATGGATGTTGGTGTTGTACCAGAATCAACCATGACCTATTCAAGACCTCCAAAAGGAACAATTGACCTATTTTCAGGTCCTTCTATTCAAATGTCTTCCCATTTCTCTCCAATGGATAGAGAAGCCAGAGTCCTAAGGTACAGAGAGAAAAAGAAGACAAGAAAATTTGAGAAAACAATTAGGTATGCTTCAAGGAAAGCCTATGCAGAAACTCGGCCGCGTATAAAAGGTCGATTCGCAAAGAGAACAGATGTAGAAGCTGAAGTTGATCAAATGTTTTCCACATCACTAATTACAGAAGTTGGATATGGAATTGTTCCCTCTTTCTGA	1203	0.4464	MLEQDFLTTTSATATVRSAATWARTCDTCRSAPCAVFCRADSAYLCAACDARIHAANRVASRHERVWVCEACERAPAAFLCKADAASLCSTCDADIHSANPLASRHQRVPILPISGYLYGPPATLLGAEDEGFVGGSCGGGCEVEEEEDEGVDHDMEDENEAASWLLLNPLKNNNNNSNNNNNNISNDHNQVANNGFLFSGEVDEYLDLVDCNSCGGDENTFNTNNTHHDEYSQQQQDHYGVPQKSYVGDSIVPVQQQQVQNFQLGLEFESSKAGFSYNGGSISQSVSVSSMDVGVVPESTMTYSRPPKGTIDLFSGPSIQMSSHFSPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTSLITEVGYGIVPSF	400

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Mepo3g00417	400	ProSiteProfiles	Zinc finger B-box type profile.	64	111	IPR000315	GO:0008270
Mepo3g00417	400	PANTHER	ZINC FINGER PROTEIN CONSTANS-LIKE 4	26	387	IPR045281	GO:0009909
Mepo3g00417	400	CDD	Bbox1_BBX-like	26	68	-	-
Mepo3g00417	400	CDD	Bbox1_BBX-like	68	111	-	-
Mepo3g00417	400	ProSiteProfiles	CCT domain profile.	331	373	IPR010402	GO:0005515
Mepo3g00417	400	Pfam	B-box zinc finger	66	111	IPR000315	GO:0008270
Mepo3g00417	400	SMART	bboxneu5	21	68	IPR000315	GO:0008270
Mepo3g00417	400	SMART	bboxneu5	69	111	IPR000315	GO:0008270
Mepo3g00417	400	ProSiteProfiles	Zinc finger B-box type profile.	21	68	IPR000315	GO:0008270
Mepo3g00417	400	Pfam	CCT motif	331	373	IPR010402	GO:0005515

Showing 1 to 10 of 10 entries

Previous1Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo3g00417	Mepo-Chr3	5655140	5658641	Transposed

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo3g00417	19	400	C2C2-CO-like Transcription Factor Family	AT3G02380	54.523	3.52e-129	374

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-CO-like	Mepo3g00417		zf-B_box	1.8e-07	No_clan

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo3g00417	K12135		-	tpra:123889374	597.045

Showing 1 to 1 of 1 entries

Previous1Next