Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00384 ATGGCTAGGTCTGCTGAAGGCCATCAAGATGAAGAATTGGTTGATGATGATGACGATCAAGACATCTTTACACCAAACACATCTTCCTCTATTAACAACAACAACAACAATGTGAAGGTGGATGAACAACCCATCAGAGGGAAAAGGGCTAACCCTCATCGTTCTAAACATTCAGAAACTGAGCAGCGTAGAAGAAGTAAAATTAATGAAAGATTTCAGGCTCTGAGAGATCTCATTCCTGAAAATGACTCAAAAAGAGATAAAGCTTCCTTTTTGTTGGAGGTTATTGAGTATATTCATTTCTTACAGGAAAAGTTACACATTTATGAACATCCTTATGAAGGATGGAATCAGGAGCCAACTAAATTAATTCCATGGAGAAATCATCACGGACCTTCCGAAAATACTACAGATCCTTCTCGTGCTATTCAAAATGGGTCTGTTGATGGAAAAAATAACGTCTCTCCGTCATTTCCTAAAAATGTACAGAACCCAATAGTGTCTGACCCCTCCACAACTATTCAGAAGGGTTGCATCCCTGGTTCATCCACAGAAGTAGTTCCCTTGACAATGCAAATGCGATTGGACATGTTTGATCCAGTTGTTAGCGGTGGTATGGTGACTCAACAGATGCTGGAGTTGCCTGTATCTAATCCTGACATGGCTTCAAATCTCCAGCCTCAAGTATGGCTTAGCAAACCAACCAAGGACAATCATATTGTTTCAGATAATACATTGAAGGAACAAGAGGAGGTGAAAATTGATAGTGGATCAGAATCAGATAGCATCTCAAGTGCCTACTCTCAAAGAATATTGGGTACTCTCACCCAAGCGCTACAATCTTCAGGTGTAGATTTGTCCCAGACCAATGTCTCAGTGGAAATTGATGTTGGTAGACGAACAAATACTGGATTTACCCCCTGCCATTATAGCTCAAAGAGGAATGAAAATCAATTTGTGAGCAATCAAGCAATGGCATGTTCAGGAATGGATTACTTCAGTGAGGATTCTGAACAGAGTCCAAAGAGGTTCAGAAGAGAAGCAAGCTAG 1050 0.4048 MARSAEGHQDEELVDDDDDQDIFTPNTSSSINNNNNNVKVDEQPIRGKRANPHRSKHSETEQRRRSKINERFQALRDLIPENDSKRDKASFLLEVIEYIHFLQEKLHIYEHPYEGWNQEPTKLIPWRNHHGPSENTTDPSRAIQNGSVDGKNNVSPSFPKNVQNPIVSDPSTTIQKGCIPGSSTEVVPLTMQMRLDMFDPVVSGGMVTQQMLELPVSNPDMASNLQPQVWLSKPTKDNHIVSDNTLKEQEEVKIDSGSESDSISSAYSQRILGTLTQALQSSGVDLSQTNVSVEIDVGRRTNTGFTPCHYSSKRNENQFVSNQAMACSGMDYFSEDSEQSPKRFRREAS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00384 349 CDD bHLH_AtBIM_like 54 127 - -
Mepo3g00384 349 MobiDBLite consensus disorder prediction 1 68 - -
Mepo3g00384 349 Pfam Helix-loop-helix DNA-binding domain 54 103 IPR011598 GO:0046983
Mepo3g00384 349 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 52 102 IPR011598 GO:0046983
Mepo3g00384 349 MobiDBLite consensus disorder prediction 23 41 - -
Mepo3g00384 349 MobiDBLite consensus disorder prediction 42 68 - -
Mepo3g00384 349 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 346 IPR044295 GO:0003700|GO:0006351|GO:0046983
Mepo3g00384 349 MobiDBLite consensus disorder prediction 130 179 - -
Mepo3g00384 349 Gene3D - 50 123 IPR036638 GO:0046983
Mepo3g00384 349 MobiDBLite consensus disorder prediction 124 179 - -
Mepo3g00384 349 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 52 131 IPR036638 GO:0046983
Mepo3g00384 349 SMART finulus 58 108 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00384 Mepo-Chr3 5222718 5229281 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g00384 3 313 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 38.658 1.10e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo3g00384 HLH 2.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g00384 - - mtr:11428511 629.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g00384 3 5222718 5229281 Mepo3g00384 3 5222718 5229281 ECH