LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo3g00378	ATGGTAGTTGTTTTGGCTTCATCCTCTGATGCTAGTGGTGGGATTGGTTGCTGGGACCTTCACACAGGTTCTGAGCAGATCCGCTACAAATCATTTTCTTCCCCTTCTCATGGACTTGTCTCTGTTGGTGACCGTTTCCTTGCATCTTCTCAGCTTCGAGAGGGACCAACTTCCTCTGGTTCCGTTTTCTTCTGGTCCTGGTCCAAGCCCCAAGTTGAAGTTAAGAGCTTTCCTGCTGAACCTATTACGCCTCTTGCTGCTAATCACAGTGGCACCTATCTAGTTGGTGGAGGTTTGTCGGGTGAAATATACTTATGGGAGGTTGAAACTGGCAGATTGCTTAAGAAGTGGCATGGTCATAATACGGCTGTTACTTGCCTGGTATTTTCTGAAGATGACTCACTTCTAATATCTGGTTTTAAAAATGGAAGCGTACGAGTTTGGTCTCTCTTAATGATATTTGATGATGTGAGAAGACGGGAAGCAAGCAAGATTTATGAGTATAGTTTTTCAGACCACACCTTGTGTGTAAATGATGTTGTGATTGGTTATGGAGGATGCAATGCAATTATAGCTTCAGCATCAGATGATCGGATGTGTAAGGTATGGACCTTATCTAATGGAATGCTACAAAGAAATATAGTGTTCCCTTCAAAAATTAAAGCCATTGCATTGGATCCTGCTGAACATGTTCTCTATGTTGGTAGTGAAGATGGAAAAATATTTGTCGCTGCACTTAACACCACAAGAATCACTACTAATGATCAAGTTTCATATATCACTGGTTCATTTTCTAACCACAGCAAGGCAGTTACTTGCTTAGCATATAGTGCCGCCGACAATTTTTTAATATCTGGATCTGATGATGGAATAGTTCGAGTTTGGAATGCCAGTACTCATAACATCATCCGTGTCTTTAAACATGCTAAAGGACCAATAACTAACATTCTTGTTCTTAGTCAAGAAAATGACTCGAGTAATCCCATGTTACAAGGAACCTCAAAAAAGAAGGGAGCTCAATTTCCTCCTCTGGAAAAGTATGCAAATTCAATGGATGAAGACTCGGATAAAACGACTATTGTCAGTCTTGGTGGTAGCAATATATGCATGGATGTTTCATACCTTAGTTCTCAAGTGATTTCTAGTTACAGTAAAGAACTTCAGAGTCAAGGTTCAGCTGCTGCTTCTGAAATGGAGATAGAGAAACTAAAACGTGATTGCCAAAAGTCGGTACAGATGGTTAACAAATGGAAAAAAATGTATGAAAACTTGCATCAATTTTGTGTAAAGGAGATGCTTGATGGAAATGAGAAATAA	1317	0.3986	MVVVLASSSDASGGIGCWDLHTGSEQIRYKSFSSPSHGLVSVGDRFLASSQLREGPTSSGSVFFWSWSKPQVEVKSFPAEPITPLAANHSGTYLVGGGLSGEIYLWEVETGRLLKKWHGHNTAVTCLVFSEDDSLLISGFKNGSVRVWSLLMIFDDVRRREASKIYEYSFSDHTLCVNDVVIGYGGCNAIIASASDDRMCKVWTLSNGMLQRNIVFPSKIKAIALDPAEHVLYVGSEDGKIFVAALNTTRITTNDQVSYITGSFSNHSKAVTCLAYSAADNFLISGSDDGIVRVWNASTHNIIRVFKHAKGPITNILVLSQENDSSNPMLQGTSKKKGAQFPPLEKYANSMDEDSDKTTIVSLGGSNICMDVSYLSSQVISSYSKELQSQGSAAASEMEIEKLKRDCQKSVQMVNKWKKMYENLHQFCVKEMLDGNEK	438

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo3g00378	438	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	264	299	-	-
	Mepo3g00378	438	PANTHER	WD-REPEAT PROTEIN 18	2	434	IPR045227	-
	Mepo3g00378	438	ProSitePatterns	Trp-Asp (WD) repeats signature.	283	297	IPR019775	-
	Mepo3g00378	438	PRINTS	G protein beta WD-40 repeat signature	191	205	IPR020472	-
	Mepo3g00378	438	PRINTS	G protein beta WD-40 repeat signature	283	297	IPR020472	-
	Mepo3g00378	438	PRINTS	G protein beta WD-40 repeat signature	136	150	IPR020472	-
	Mepo3g00378	438	Gene3D	-	3	153	IPR015943	GO:0005515
	Mepo3g00378	438	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	117	150	-	-
	Mepo3g00378	438	SUPERFAMILY	WD40 repeat-like	10	319	IPR036322	GO:0005515
	Mepo3g00378	438	ProSiteProfiles	Trp-Asp (WD) repeats profile.	117	150	IPR001680	GO:0005515
	Mepo3g00378	438	Gene3D	-	154	377	IPR015943	GO:0005515
	Mepo3g00378	438	Pfam	WD domain, G-beta repeat	262	296	IPR001680	GO:0005515
	Mepo3g00378	438	Pfam	WD domain, G-beta repeat	112	149	IPR001680	GO:0005515
	Mepo3g00378	438	ProSiteProfiles	Trp-Asp (WD) repeats profile.	264	305	IPR001680	GO:0005515
	Mepo3g00378	438	SMART	WD40_4	257	296	IPR001680	GO:0005515
	Mepo3g00378	438	SMART	WD40_4	207	245	IPR001680	GO:0005515
	Mepo3g00378	438	SMART	WD40_4	70	107	IPR001680	GO:0005515
	Mepo3g00378	438	SMART	WD40_4	110	149	IPR001680	GO:0005515
	Mepo3g00378	438	SMART	WD40_4	163	204	IPR001680	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo3g00378	Mepo-Chr3	5097736	5103945	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo3g00378	80	326	Eukaryotic Initiation Factors Gene Family	AT2G46290	22.348	5.33e-10	58.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo3g00378	K14829		-	gmx:100791195	623.239