Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00281 ATGGCGTTCTTTGGTAAAATGGGAAAGTTACTCCAGAATTCTGCAATCAAGCACATCAATCATGATTTATCTATGTCTTCTCCTTTGGCATTCCAAGCAATTAGATCCATGTCATCTGCAAAGCTTTATGTTGGAGGTATTTCATATAGCACTGATGATGCGAGTCTCCGAGAATCTTTTGCTCGCTATGGAGATGTTCTTGATGCAAGAGTTATCATGGACCGTGAACAAGGCAGGTCCAAAGGATTTGGCTTCGTAACTTTTGCAACAAGCGAGGAAGCATCTTCTGCCCTTCAGGCCATGGATAACCAGGAACTTCATGGTCGGACAGTACGAGTGAACTATGCTCAAGAAAGGCCGCGCTCTGGGTATGGTGGTGGTGGCTATGGTGGAGACGGTGGTGGCTATAGTGGTGGCGGCGGCGGCTATAGTGGTGGTGGCGGCGGTGGCTATGGTGGCGGCGGTGGTGAGCACGGTGGTGGCCGCTACTAA 492 0.4959 MAFFGKMGKLLQNSAIKHINHDLSMSSPLAFQAIRSMSSAKLYVGGISYSTDDASLRESFARYGDVLDARVIMDREQGRSKGFGFVTFATSEEASSALQAMDNQELHGRTVRVNYAQERPRSGYGGGGYGGDGGGYSGGGGGYSGGGGGGYGGGGGEHGGGRY 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00281 163 SUPERFAMILY RNA-binding domain, RBD 26 150 IPR035979 GO:0003676
Mepo3g00281 163 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Mepo3g00281 163 SMART rrm1_1 41 114 IPR000504 GO:0003723
Mepo3g00281 163 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 35 157 - -
Mepo3g00281 163 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 12 136 - -
Mepo3g00281 163 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Mepo3g00281 163 MobiDBLite consensus disorder prediction 137 163 - -
Mepo3g00281 163 Gene3D - 30 162 IPR012677 -
Mepo3g00281 163 CDD RRM2_NsCP33_like 41 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00281 Mepo-Chr3 3804969 3807301 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g00281 39 126 Eukaryotic Initiation Factors Gene Family AT1G49760 37.363 6.17e-13 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g00281 K12741 - gmx:100807155 188.348