Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00280 ATGGCGTTCTTTGGTAAAATGGGAAAGTTACTCCAGAATTCTGCTGTCAAGCACATCAATCATGATTTATCTATGTCTACTCCTTCGTTATTTCAAGCAATTAGATCCATGTCATCTGCCAAGCTTTTTATTGGAGGTGTTTCATATAGCACTGATGAAACTGGTCTCCGAGAAGCTTTTTCTCGCTATGGAGATGTTCTTGAAGCAAGGATTATCATGGATCGTGAAACAGGAAGGTCCCGAGGTTTTGGCTTCATAACTTTCGCAACGAGCGAGGAAGCATCCTCTGCCCTGCAGGCCATGGATAACCAGGAACTTGATGGTCGGACAGTACGAGTGAACTATGCTACAGAAAGGGCACGTCCTGGGTTCGGTGGTGGTGGTGGCTATGGTGGTGGTGGTGGCGGCTATGGCGGCGGCGGAGGATATGGTGGTGGTGGCGGCTATAGTGGTGGTGGCGGAAATTATGGTGGCTATGGTGGTGGTGGCGGAAATTATGGCGGCGGCGGCGGCAGTACATATGGTCGCAATGATTATAACAGTAGTGGCTATGCAAGTGGTGGTGCCCCAGACAGCTATACTGGTGGCCATGTCGGGACTACTTATGCTGCTGGTGGTGAATTCAGCAGCAACTCTAATTTGGGATATGGCAGCCACCAAGATGATGGAATAGGCGCAGGTAAGAATGAATTCGGTGAGCCGTTAGAAAACAACCATGTGCCGGAGAACAATGATCAATCTGATGACTATGCTGAGAACCGTAGGTGA 768 0.4909 MAFFGKMGKLLQNSAVKHINHDLSMSTPSLFQAIRSMSSAKLFIGGVSYSTDETGLREAFSRYGDVLEARIIMDRETGRSRGFGFITFATSEEASSALQAMDNQELDGRTVRVNYATERARPGFGGGGGYGGGGGGYGGGGGYGGGGGYSGGGGNYGGYGGGGGNYGGGGGSTYGRNDYNSSGYASGGAPDSYTGGHVGTTYAAGGEFSSNSNLGYGSHQDDGIGAGKNEFGEPLENNHVPENNDQSDDYAENRR 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00280 255 PRINTS Eggshell protein signature 159 169 - -
Mepo3g00280 255 PRINTS Eggshell protein signature 195 213 - -
Mepo3g00280 255 PRINTS Eggshell protein signature 36 52 - -
Mepo3g00280 255 PRINTS Eggshell protein signature 132 147 - -
Mepo3g00280 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Mepo3g00280 255 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 12 137 - -
Mepo3g00280 255 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 36 209 - -
Mepo3g00280 255 MobiDBLite consensus disorder prediction 211 255 - -
Mepo3g00280 255 SMART rrm1_1 41 114 IPR000504 GO:0003723
Mepo3g00280 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Mepo3g00280 255 SUPERFAMILY RNA-binding domain, RBD 25 148 IPR035979 GO:0003676
Mepo3g00280 255 CDD RRM2_NsCP33_like 41 116 - -
Mepo3g00280 255 Gene3D - 12 142 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00280 Mepo-Chr3 3799935 3803748 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g00280 30 126 C2H2 Transcription Factor Family AT2G19380 34.021 5.82e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g00280 K12741 - gmx:100807155 241.121