Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00274 ATGACAAAGAAAACAAGGGGATCATCAGCTGCAAAGAAAAAAATAGCTTATCATGAAGCCAAGATGTATCTCAATGAAATAAAGGATGCTTTTAAAGATGAGAAGCATAAGTATTATGAATTTTTAAGAGTCCTGAAAGATTTCGAGAAACGAAGAATTGATCTGAAGGGTGTGGTGGCAAGAGTGAAGGAATTTTTTCAAGGGCATGATGAATTGTTATTGAAATTTCAAACCTTTTTGCCAGATGGAATTGAAATCTCACTTCCACCAAAGAAACCAAAAGTGATCAGTAAAGAATATGCTTTGAAATATGTCAGCAAGGTGAAGACTCGATTTCGACGTAACCCTAAGGTTTATGAATCGTTTTTAGACATAATGCAAATGTATAAAAACGACTATAAGAGTGTTAAAGAGCTCCACCAAACGGTTATTTCAATTTTTCAAGGCCACCAGGATCTTGTTGATGAGTTTACTCATTTTCTCCCATAA 489 0.3456 MTKKTRGSSAAKKKIAYHEAKMYLNEIKDAFKDEKHKYYEFLRVLKDFEKRRIDLKGVVARVKEFFQGHDELLLKFQTFLPDGIEISLPPKKPKVISKEYALKYVSKVKTRFRRNPKVYESFLDIMQMYKNDYKSVKELHQTVISIFQGHQDLVDEFTHFLP 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00274 162 ProSiteProfiles PAH domain profile. 92 162 IPR003822 GO:0006355
Mepo3g00274 162 PANTHER SIN3B-RELATED 18 162 IPR039774 GO:0003714
Mepo3g00274 162 SUPERFAMILY PAH2 domain 97 162 IPR036600 GO:0006355
Mepo3g00274 162 FunFam Paired amphipathic helix SIN3-like protein 93 162 - -
Mepo3g00274 162 FunFam Paired amphipathic helix protein Sin3 19 81 - -
Mepo3g00274 162 Pfam Paired amphipathic helix repeat 118 161 IPR003822 GO:0006355
Mepo3g00274 162 Pfam Paired amphipathic helix repeat 36 80 IPR003822 GO:0006355
Mepo3g00274 162 SUPERFAMILY PAH2 domain 11 82 IPR036600 GO:0006355
Mepo3g00274 162 Gene3D Paired amphipathic helix 19 81 IPR036600 GO:0006355
Mepo3g00274 162 Gene3D Paired amphipathic helix 101 162 IPR036600 GO:0006355
Mepo3g00274 162 ProSiteProfiles PAH domain profile. 13 83 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00274 Mepo-Chr3 3663589 3665418 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g00274 19 109 WRKY Transcription Factor Family AT4G12020 37.363 3.65e-14 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mepo3g00274 PAH 8.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g00274 K11644 - psat:127121411 191.045